Non-Coding RNA Search

reep06c_o23.y1

Sequence:


               
               GAGGGGCGGCGGCAACGCGCTTCGCAGGACACTGAGGACGAAGAATCTGGTGCTTCCGGC
TCAGACAGTGGCAGTTCTTTGGCGCGGGGCGGCGGGAGCTGCAGCGGCAGTGTTGGAGGC
GGCGGCAGCGGCTCTCTGCCCTCCCAGCGCGGAGGCCGAGTCGGGGCCCTTCATCTGCGG
CGGGTGGAGAGCGGGGGGGCCAAGAGCGCTGAGGAGTCGGAATGTGAGAGTGAAGATGGC
ATCGAGGGCGATGCTGTTCTCTCTGATTACGAAAGTGCAGAAGACTCAGAAGGTGATGAA
GGAGATTATAGTGAAGAGGAAAACTCCAAAGTGGAGCTGAAATCCGAGGCCAATGATGCT
GCTAATTCCTCAGCAAAGGAAGAGAAAGGAGAAGAAAAGCCTGACTCCAAAGGCACTGTG
ACTGGAGAGAGGCAGAGTGGGGATGGACAGGAAAGCACAGAGCCTGTGGAGAACAAAGTT
GGTAAAAAGGGCCCTAAACATTTGGATGATGACGAAGATCGGAAGAACCCAGCATACATA
CCCCGGAAAGGGCTCTTTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGGCGGCGGCAACGCGCTTCGCAGGACACTGAGGACGAAGAATCTGGTGCTTCCGGC
TCAGACAGTGGCAGTTCTTTGGCGCGGGGCGGCGGGAGCTGCAGCGGCAGTGTTGGAGGC
GGCGGCAGCGGCTCTCTGCCCTCCCAGCGCGGAGGCCGAGTCGGGGCCCTTCATCTGCGG
CGGGTGGAGAGCGGGGGGGCCAAGAGCGCTGAGGAGTCGGAATGTGAGAGTGAAGATGGC
ATCGAGGGCGATGCTGTTCTCTCTGATTACGAAAGTGCAGAAGACTCAGAAGGTGATGAA
GGAGATTATAGTGAAGAGGAAAACTCCAAAGTGGAGCTGAAATCCGAGGCCAATGATGCT
GCTAATTCCTCAGCAAAGGAAGAGAAAGGAGAAGAAAAGCCTGACTCCAAAGGCACTGTG
ACTGGAGAGAGGCAGAGTGGGGATGGACAGGAAAGCACAGAGCCTGTGGAGAACAAAGTT
GGTAAAAAGGGCCCTAAACATTTGGATGATGACGAAGATCGGAAGAACCCAGCATACATA
CCCCGGAAAGGGCTCTTTTTTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               44-163, + strand, RNAz p=0.521835
               

               
               292-458, + strand, RNAz p=0.990077

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-163, + strand, RNAz p=0.521835
               

               
               292-458, + strand, RNAz p=0.990077

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               292-458, CJ492564 macaque testis cDNA library QtsA Macaca fascicularis cDNA 
(dbj|CJ492564.1|), blast E-value=0, identity=91.62% 
               

               
               292-458, DA238022 BRAWH3 Homo sapiens cDNA clone BRAWH3035050 5', mRNA 
(dbj|DA238022.1|), blast E-value=0, identity=90.42% 
               

               
               292-458, LIB4004-020-Q1-K1-F4 LIB4004 Canis familiaris cDNA clone 
(gb|DN401984.1|), blast E-value=0, identity=91.62% 
               

               
               292-458, LB02717.CR_B21 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV890459.1|), 
blast E-value=0, identity=93.41% 
               

               
               292-458, LB02952.CR_K14 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE355417.1|), 
blast E-value=0, identity=93.41% 
               

               
               292-458, LB02958.CR_D01 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE357127.1|), 
blast E-value=0, identity=93.41%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               292-458, CJ492564 macaque testis cDNA library QtsA Macaca fascicularis cDNA 
(dbj|CJ492564.1|), blast E-value=0, identity=91.62% 
               

               
               292-458, DA238022 BRAWH3 Homo sapiens cDNA clone BRAWH3035050 5', mRNA 
(dbj|DA238022.1|), blast E-value=0, identity=90.42% 
               

               
               292-458, LIB4004-020-Q1-K1-F4 LIB4004 Canis familiaris cDNA clone 
(gb|DN401984.1|), blast E-value=0, identity=91.62% 
               

               
               292-458, LB02717.CR_B21 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV890459.1|), 
blast E-value=0, identity=93.41% 
               

               
               292-458, LB02952.CR_K14 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE355417.1|), 
blast E-value=0, identity=93.41% 
               

               
               292-458, LB02958.CR_D01 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE357127.1|), 
blast E-value=0, identity=93.41%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-232, gnl|bosTau2|chr19 (34468861-34468634)
               

               
               5-232, gnl|Hg17|chr17 (35550338-35550565)
               

               
               5-232, gnl|Mm7|chr11 (98918913-98919137)
               


               
               292-458, gnl|bosTau2|chr19 (34455463-34455297)
               

               
               292-458, gnl|Hg17|chr17 (35571532-35571698)
               

               
               292-458, gnl|Mm7|chr11 (98930470-98930630)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-232, gnl|bosTau2|chr19 (34468861-34468634)
               

               
               5-232, gnl|Hg17|chr17 (35550338-35550565)
               

               
               5-232, gnl|Mm7|chr11 (98918913-98919137)
               


               
               292-458, gnl|bosTau2|chr19 (34455463-34455297)
               

               
               292-458, gnl|Hg17|chr17 (35571532-35571698)
               

               
               292-458, gnl|Mm7|chr11 (98930470-98930630)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	44-163, + strand, RNAz p=0.521835
	292-458, + strand, RNAz p=0.990077

	292-458, CJ492564 macaque testis cDNA library QtsA Macaca fascicularis cDNA (dbj\|CJ492564.1\|), blast E-value=0, identity=91.62%
	292-458, DA238022 BRAWH3 Homo sapiens cDNA clone BRAWH3035050 5', mRNA (dbj\|DA238022.1\|), blast E-value=0, identity=90.42%
	292-458, LIB4004-020-Q1-K1-F4 LIB4004 Canis familiaris cDNA clone (gb\|DN401984.1\|), blast E-value=0, identity=91.62%
	292-458, LB02717.CR_B21 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV890459.1\|), blast E-value=0, identity=93.41%
	292-458, LB02952.CR_K14 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE355417.1\|), blast E-value=0, identity=93.41%
	292-458, LB02958.CR_D01 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE357127.1\|), blast E-value=0, identity=93.41%

	5-232, gnl\|bosTau2\|chr19 (34468861-34468634)
	5-232, gnl\|Hg17\|chr17 (35550338-35550565)
	5-232, gnl\|Mm7\|chr11 (98918913-98919137)

	292-458, gnl\|bosTau2\|chr19 (34455463-34455297)
	292-458, gnl\|Hg17\|chr17 (35571532-35571698)
	292-458, gnl\|Mm7\|chr11 (98930470-98930630)