Non-Coding RNA Search

reep09c_l15.y1

Sequence:


               
               CACCCCTGCTGAAGTTCAGCAGGGCCTGTGAAGGCATGAAGCCGGAGGCCGGGTAGGGTC
CCTGCATTTTCCAACGCAGACAGGAGTTTTACTCCAGGAGTCTAGGAAATGGTGCTATTG
TGAGTTAGTTCGGAGCCTTTGTCATTCTGAGTTTTCAGTGTTAATATAGAAAGTATTGAG
CAGGGGAGCTTTTGAAAGGCTGTCCATCACTGCTTCTCTGTAAATGAAAATGTTACAGCA
CTCGGACAGAGCATCTTAAGGCCACAGTTCCATACTTTTCATGGGATGCTGTGTGATGGA
GGCTGAGGCTTCTCCTGTCAAGAGGTCAATTGATGGATGCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCCTGCTGAAGTTCAGCAGGGCCTGTGAAGGCATGAAGCCGGAGGCCGGGTAGGGTC
CCTGCATTTTCCAACGCAGACAGGAGTTTTACTCCAGGAGTCTAGGAAATGGTGCTATTG
TGAGTTAGTTCGGAGCCTTTGTCATTCTGAGTTTTCAGTGTTAATATAGAAAGTATTGAG
CAGGGGAGCTTTTGAAAGGCTGTCCATCACTGCTTCTCTGTAAATGAAAATGTTACAGCA
CTCGGACAGAGCATCTTAAGGCCACAGTTCCATACTTTTCATGGGATGCTGTGTGATGGA
GGCTGAGGCTTCTCCTGTCAAGAGGTCAATTGATGGATGCTCA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-341, gnl|bosTau2|chr5 (43943226-43942878)
               

               
               1-341, gnl|canFam2|chr4 (16177962-16178789)
               

               
               1-341, gnl|dasNov1|scaffold_688 (30753-31567)
               

               
               1-341, gnl|echTel1|scaffold_287972 (58192-59036)
               

               
               1-341, gnl|galGal2|chr6 (8063390-8062508)
               

               
               1-341, gnl|hg17|chr10 (62299574-62300425)
               

               
               1-341, gnl|Hg17|chr10 (62300153-62299805)
               

               
               1-341, gnl|loxAfr1|scaffold_621 (60917-60088)
               

               
               1-341, gnl|mm7|chr10 (68894801-68893907)
               

               
               1-341, gnl|Mm7|chr10 (68894187-68894558)
               

               
               1-341, gnl|monDom2|scaffold_67 (1007756-1008641)
               

               
               1-341, gnl|panTro1|chr8 (63152820-63153674)
               

               
               1-341, gnl|rheMac2|chr9 (76409738-76408888)
               

               
               1-341, gnl|rn3|chr20 (20103985-20104880)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-341, gnl|bosTau2|chr5 (43943226-43942878)
               

               
               1-341, gnl|canFam2|chr4 (16177962-16178789)
               

               
               1-341, gnl|dasNov1|scaffold_688 (30753-31567)
               

               
               1-341, gnl|echTel1|scaffold_287972 (58192-59036)
               

               
               1-341, gnl|galGal2|chr6 (8063390-8062508)
               

               
               1-341, gnl|hg17|chr10 (62299574-62300425)
               

               
               1-341, gnl|Hg17|chr10 (62300153-62299805)
               

               
               1-341, gnl|loxAfr1|scaffold_621 (60917-60088)
               

               
               1-341, gnl|mm7|chr10 (68894801-68893907)
               

               
               1-341, gnl|Mm7|chr10 (68894187-68894558)
               

               
               1-341, gnl|monDom2|scaffold_67 (1007756-1008641)
               

               
               1-341, gnl|panTro1|chr8 (63152820-63153674)
               

               
               1-341, gnl|rheMac2|chr9 (76409738-76408888)
               

               
               1-341, gnl|rn3|chr20 (20103985-20104880)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-341, gnl\|bosTau2\|chr5 (43943226-43942878)
	1-341, gnl\|canFam2\|chr4 (16177962-16178789)
	1-341, gnl\|dasNov1\|scaffold_688 (30753-31567)
	1-341, gnl\|echTel1\|scaffold_287972 (58192-59036)
	1-341, gnl\|galGal2\|chr6 (8063390-8062508)
	1-341, gnl\|hg17\|chr10 (62299574-62300425)
	1-341, gnl\|Hg17\|chr10 (62300153-62299805)
	1-341, gnl\|loxAfr1\|scaffold_621 (60917-60088)
	1-341, gnl\|mm7\|chr10 (68894801-68893907)
	1-341, gnl\|Mm7\|chr10 (68894187-68894558)
	1-341, gnl\|monDom2\|scaffold_67 (1007756-1008641)
	1-341, gnl\|panTro1\|chr8 (63152820-63153674)
	1-341, gnl\|rheMac2\|chr9 (76409738-76408888)
	1-341, gnl\|rn3\|chr20 (20103985-20104880)