Non-Coding RNA Search

reep10c_g20.y1

Sequence:


               
               CGCTGGATGGACTGGAGGGACCGCTGGGGCCAGGAGGTGATCTTAGGTAATGAGGATCCT
GGGGGAGTGGTGCTGAAGGACCTTGGACCCCCCATGGTGGCCCGAATGGTTCGCTTCTAT
CCCCGGGCGGACCGAGTCATGAGCGTCTGTCTGCGGGTGGAGCTCTATGGCTGCCTCTGG
AAGGATGGACTCCTGTCTTACACGGCCCCTGTGGGGCAGACGATGTACTTATCTGAGGCC
GTGCACCTCAACGACTCCACCTATGATGGACACACCACGCACACCGTTGGCGGGCTGCAG
TATGGAGGTCTAGGCCAGCTGGCAGACGGTGTGGTGGGGCTAGATGACTTTAGGAAGAGC
CAGGAGCTGCGGGTCTGGCCAGGCTATGACTATGTGGGATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTGGATGGACTGGAGGGACCGCTGGGGCCAGGAGGTGATCTTAGGTAATGAGGATCCT
GGGGGAGTGGTGCTGAAGGACCTTGGACCCCCCATGGTGGCCCGAATGGTTCGCTTCTAT
CCCCGGGCGGACCGAGTCATGAGCGTCTGTCTGCGGGTGGAGCTCTATGGCTGCCTCTGG
AAGGATGGACTCCTGTCTTACACGGCCCCTGTGGGGCAGACGATGTACTTATCTGAGGCC
GTGCACCTCAACGACTCCACCTATGATGGACACACCACGCACACCGTTGGCGGGCTGCAG
TATGGAGGTCTAGGCCAGCTGGCAGACGGTGTGGTGGGGCTAGATGACTTTAGGAAGAGC
CAGGAGCTGCGGGTCTGGCCAGGCTATGACTATGTGGGATGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               287-402, + strand, RNAz p=0.946948

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               287-402, + strand, RNAz p=0.946948

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK130776, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK130776, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               28-187, gnl|bosTau2|chr23 (20686041-20685882)
               

               
               28-187, gnl|canFam2|chr12 (3665327-3665524)
               

               
               28-187, gnl|danRer3|chr16 (21705448-21705273)
               

               
               28-187, gnl|echTel1|scaffold_208966 (3012-2830)
               

               
               28-187, gnl|fr1|chrUn (204834204-204834014)
               

               
               28-187, gnl|galGal2|chr8 (3742912-3742715)
               

               
               28-187, gnl|hg17|chr6 (30966691-30966886)
               

               
               28-187, gnl|Hg17|chr6 (30966720-30966879)
               

               
               28-187, gnl|loxAfr1|scaffold_4520 (1739-1936)
               

               
               28-187, gnl|mm7|chr17 (33792638-33792439)
               

               
               28-187, gnl|Mm7|chr17 (33792603-33792444)
               

               
               28-187, gnl|monDom2|scaffold_42 (18457976-18457778)
               

               
               28-187, gnl|oryCun1|scaffold_112945 (3840-4036)
               

               
               28-187, gnl|panTro1|chr5 (31429530-31429725)
               

               
               28-187, gnl|rheMac2|chr4 (30465931-30466124)
               

               
               28-187, gnl|rn3|chr20 (3205042-3205240)
               

               
               28-187, gnl|tetNig1|chr8 (9231149-9231332)
               

               
               28-187, gnl|xenTro1|scaffold_302 (182619-182795)
               


               
               287-402, gnl|bosTau2|chr23 (20685287-20685172)
               

               
               287-402, gnl|Hg17|chr6 (30967751-30967866)
               

               
               287-402, gnl|Mm7|chr17 (33791185-33791072)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-187, gnl|bosTau2|chr23 (20686041-20685882)
               

               
               28-187, gnl|canFam2|chr12 (3665327-3665524)
               

               
               28-187, gnl|danRer3|chr16 (21705448-21705273)
               

               
               28-187, gnl|echTel1|scaffold_208966 (3012-2830)
               

               
               28-187, gnl|fr1|chrUn (204834204-204834014)
               

               
               28-187, gnl|galGal2|chr8 (3742912-3742715)
               

               
               28-187, gnl|hg17|chr6 (30966691-30966886)
               

               
               28-187, gnl|Hg17|chr6 (30966720-30966879)
               

               
               28-187, gnl|loxAfr1|scaffold_4520 (1739-1936)
               

               
               28-187, gnl|mm7|chr17 (33792638-33792439)
               

               
               28-187, gnl|Mm7|chr17 (33792603-33792444)
               

               
               28-187, gnl|monDom2|scaffold_42 (18457976-18457778)
               

               
               28-187, gnl|oryCun1|scaffold_112945 (3840-4036)
               

               
               28-187, gnl|panTro1|chr5 (31429530-31429725)
               

               
               28-187, gnl|rheMac2|chr4 (30465931-30466124)
               

               
               28-187, gnl|rn3|chr20 (3205042-3205240)
               

               
               28-187, gnl|tetNig1|chr8 (9231149-9231332)
               

               
               28-187, gnl|xenTro1|scaffold_302 (182619-182795)
               


               
               287-402, gnl|bosTau2|chr23 (20685287-20685172)
               

               
               287-402, gnl|Hg17|chr6 (30967751-30967866)
               

               
               287-402, gnl|Mm7|chr17 (33791185-33791072)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	28-187, gnl\|bosTau2\|chr23 (20686041-20685882)
	28-187, gnl\|canFam2\|chr12 (3665327-3665524)
	28-187, gnl\|danRer3\|chr16 (21705448-21705273)
	28-187, gnl\|echTel1\|scaffold_208966 (3012-2830)
	28-187, gnl\|fr1\|chrUn (204834204-204834014)
	28-187, gnl\|galGal2\|chr8 (3742912-3742715)
	28-187, gnl\|hg17\|chr6 (30966691-30966886)
	28-187, gnl\|Hg17\|chr6 (30966720-30966879)
	28-187, gnl\|loxAfr1\|scaffold_4520 (1739-1936)
	28-187, gnl\|mm7\|chr17 (33792638-33792439)
	28-187, gnl\|Mm7\|chr17 (33792603-33792444)
	28-187, gnl\|monDom2\|scaffold_42 (18457976-18457778)
	28-187, gnl\|oryCun1\|scaffold_112945 (3840-4036)
	28-187, gnl\|panTro1\|chr5 (31429530-31429725)
	28-187, gnl\|rheMac2\|chr4 (30465931-30466124)
	28-187, gnl\|rn3\|chr20 (3205042-3205240)
	28-187, gnl\|tetNig1\|chr8 (9231149-9231332)
	28-187, gnl\|xenTro1\|scaffold_302 (182619-182795)

	287-402, gnl\|bosTau2\|chr23 (20685287-20685172)
	287-402, gnl\|Hg17\|chr6 (30967751-30967866)
	287-402, gnl\|Mm7\|chr17 (33791185-33791072)