Non-Coding RNA Search

reep11c_j15.y1

Sequence:


               
               CTGGAAGAAAAATGGGAAGGGGCCCCGGAGATCTGGGTGAAGTCTGGACCTGAGAAATGT
GAGGGTGTGTTGGGTGGTGGAGTGGGCAGAAGTGCCTAGAAATGTTCGGGGGAAGAAAAG
GAAGCAGGCCTGGGCCAGTCCGGGCCCTTTCAGAATTCAGGGCCTCGGCCTGGCCGGACT
GGCTCCCTCAGCATCTCCCCTGCCTCCTTCCCCTCCGTGTACAATGCCGGGGATTATGCC
GAGGGGCGGAGCGGCCAAGTGGCCGTCTGGCCCGCTGCACTTATAAAGGTGCTATAGAAA
TGTGCAGTCATTCAAAGTCCCGGGGCAGGCGGGCTGGCGGGCCGGCGGGCCGGCGGGCGG
GCCTGGGGAGGCTTTGCATCTGCAGTTGCTGGGGGAGCATGAAGGGGGGCAGAGGCGAGG
GCTGATTTACAGTGGTTCAGTGCAGCTTCAAAGAAGGGGGAGAAAAGCAACGGGACTTCT
GGCTCAAAGTGCTGCTTTGCATCTTGTCTTGCATAAATTTGCATACTGAGTTCAAAGTCG
TAAAATAGTCTTGGGGAATGAGTGGGACCCACTGTCATTGATTGCTAGCTAGCATCACTA
CCTTCCGTCCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAAGAAAAATGGGAAGGGGCCCCGGAGATCTGGGTGAAGTCTGGACCTGAGAAATGT
GAGGGTGTGTTGGGTGGTGGAGTGGGCAGAAGTGCCTAGAAATGTTCGGGGGAAGAAAAG
GAAGCAGGCCTGGGCCAGTCCGGGCCCTTTCAGAATTCAGGGCCTCGGCCTGGCCGGACT
GGCTCCCTCAGCATCTCCCCTGCCTCCTTCCCCTCCGTGTACAATGCCGGGGATTATGCC
GAGGGGCGGAGCGGCCAAGTGGCCGTCTGGCCCGCTGCACTTATAAAGGTGCTATAGAAA
TGTGCAGTCATTCAAAGTCCCGGGGCAGGCGGGCTGGCGGGCCGGCGGGCCGGCGGGCGG
GCCTGGGGAGGCTTTGCATCTGCAGTTGCTGGGGGAGCATGAAGGGGGGCAGAGGCGAGG
GCTGATTTACAGTGGTTCAGTGCAGCTTCAAAGAAGGGGGAGAAAAGCAACGGGACTTCT
GGCTCAAAGTGCTGCTTTGCATCTTGTCTTGCATAAATTTGCATACTGAGTTCAAAGTCG
TAAAATAGTCTTGGGGAATGAGTGGGACCCACTGTCATTGATTGCTAGCTAGCATCACTA
CCTTCCGTCCCCCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               93-208, - strand, RNAz p=0.972183
               

               
               249-358, - strand, RNAz p=0.63539

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-208, - strand, RNAz p=0.972183
               

               
               249-358, - strand, RNAz p=0.63539

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               131-235, - strand, RNAmicro p=0.999365
               

               
               136-289, + strand, RNAmicro p=0.998122

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               131-235, - strand, RNAmicro p=0.999365
               

               
               136-289, + strand, RNAmicro p=0.998122

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-614, gnl|bosTau2|chr2 (57654912-57654293)
               

               
               1-614, gnl|Hg17|chr2 (217326816-217327426)
               

               
               1-614, gnl|Mm7|chr1 (73069151-73069778)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-614, gnl|bosTau2|chr2 (57654912-57654293)
               

               
               1-614, gnl|Hg17|chr2 (217326816-217327426)
               

               
               1-614, gnl|Mm7|chr1 (73069151-73069778)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	93-208, - strand, RNAz p=0.972183
	249-358, - strand, RNAz p=0.63539

	131-235, - strand, RNAmicro p=0.999365
	136-289, + strand, RNAmicro p=0.998122

	1-614, gnl\|bosTau2\|chr2 (57654912-57654293)
	1-614, gnl\|Hg17\|chr2 (217326816-217327426)
	1-614, gnl\|Mm7\|chr1 (73069151-73069778)