Non-Coding RNA Search

reep11c_l8.y1

Sequence:


               
               GCTTTTCATACTTATTCTGTTGCTGCTCTTTTTATGTTTTCTGTTTTTAAGAGGAAGGTG
GTTTATTCTCTCCTGAGAGTATTACACATTAACCAAAGTAAGATAAATCATATGTCTAAA
CATTGTAAGTACTCTGATGAAAACTCAGCTTCCAAATGAGGAAAAGATGGTGTTTAAATG
CTCAGTTGACATGGGCCAAACGGTGGTGGGGGTGCCTTCTGCCTTTTAGCTCTAATAAAT
CACAAGTCTATAACGTGTGCCTTACGAGGAAGAGCATTTTATTACTAATGGATTATCCTG
CAGGAACATAAAACAGATATAAATATAAATGAAGTCCTTGATTTATTTAAGGAGACAACT
CCTGTGTCTTTTTCTCAATTCATCGTTATTCCATTAATAACATAACCTCAGGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTTCATACTTATTCTGTTGCTGCTCTTTTTATGTTTTCTGTTTTTAAGAGGAAGGTG
GTTTATTCTCTCCTGAGAGTATTACACATTAACCAAAGTAAGATAAATCATATGTCTAAA
CATTGTAAGTACTCTGATGAAAACTCAGCTTCCAAATGAGGAAAAGATGGTGTTTAAATG
CTCAGTTGACATGGGCCAAACGGTGGTGGGGGTGCCTTCTGCCTTTTAGCTCTAATAAAT
CACAAGTCTATAACGTGTGCCTTACGAGGAAGAGCATTTTATTACTAATGGATTATCCTG
CAGGAACATAAAACAGATATAAATATAAATGAAGTCCTTGATTTATTTAAGGAGACAACT
CCTGTGTCTTTTTCTCAATTCATCGTTATTCCATTAATAACATAACCTCAGGTCA

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-246, gnl|bosTau2|chr3 (55081774-55081529)
               

               
               1-246, gnl|Hg17|chr1 (64745401-64745660)
               


               
               268-402, gnl|bosTau2|chr3 (55081527-55081393)
               

               
               268-402, gnl|canFam2|chr5 (48666361-48666056)
               

               
               268-402, gnl|dasNov1|scaffold_1270 (129308-128995)
               

               
               268-402, gnl|echTel1|scaffold_289979 (183140-183451)
               

               
               268-402, gnl|hg17|chr1 (64745540-64745856)
               

               
               268-402, gnl|Hg17|chr1 (64745682-64745803)
               

               
               268-402, gnl|loxAfr1|scaffold_174059 (883-576)
               

               
               268-402, gnl|mm7|chr4 (100255897-100256210)
               

               
               268-402, gnl|Mm7|chr4 (100256036-100256157)
               

               
               268-402, gnl|monDom2|scaffold_40 (10252505-10252157)
               

               
               268-402, gnl|oryCun1|scaffold_212989 (50012-50335)
               

               
               268-402, gnl|panTro1|chr1 (63086578-63086894)
               

               
               268-402, gnl|rheMac2|chr1 (67333764-67334082)
               

               
               268-402, gnl|rn3|chr5 (121540122-121540435)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-246, gnl|bosTau2|chr3 (55081774-55081529)
               

               
               1-246, gnl|Hg17|chr1 (64745401-64745660)
               


               
               268-402, gnl|bosTau2|chr3 (55081527-55081393)
               

               
               268-402, gnl|canFam2|chr5 (48666361-48666056)
               

               
               268-402, gnl|dasNov1|scaffold_1270 (129308-128995)
               

               
               268-402, gnl|echTel1|scaffold_289979 (183140-183451)
               

               
               268-402, gnl|hg17|chr1 (64745540-64745856)
               

               
               268-402, gnl|Hg17|chr1 (64745682-64745803)
               

               
               268-402, gnl|loxAfr1|scaffold_174059 (883-576)
               

               
               268-402, gnl|mm7|chr4 (100255897-100256210)
               

               
               268-402, gnl|Mm7|chr4 (100256036-100256157)
               

               
               268-402, gnl|monDom2|scaffold_40 (10252505-10252157)
               

               
               268-402, gnl|oryCun1|scaffold_212989 (50012-50335)
               

               
               268-402, gnl|panTro1|chr1 (63086578-63086894)
               

               
               268-402, gnl|rheMac2|chr1 (67333764-67334082)
               

               
               268-402, gnl|rn3|chr5 (121540122-121540435)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-246, gnl\|bosTau2\|chr3 (55081774-55081529)
	1-246, gnl\|Hg17\|chr1 (64745401-64745660)

	268-402, gnl\|bosTau2\|chr3 (55081527-55081393)
	268-402, gnl\|canFam2\|chr5 (48666361-48666056)
	268-402, gnl\|dasNov1\|scaffold_1270 (129308-128995)
	268-402, gnl\|echTel1\|scaffold_289979 (183140-183451)
	268-402, gnl\|hg17\|chr1 (64745540-64745856)
	268-402, gnl\|Hg17\|chr1 (64745682-64745803)
	268-402, gnl\|loxAfr1\|scaffold_174059 (883-576)
	268-402, gnl\|mm7\|chr4 (100255897-100256210)
	268-402, gnl\|Mm7\|chr4 (100256036-100256157)
	268-402, gnl\|monDom2\|scaffold_40 (10252505-10252157)
	268-402, gnl\|oryCun1\|scaffold_212989 (50012-50335)
	268-402, gnl\|panTro1\|chr1 (63086578-63086894)
	268-402, gnl\|rheMac2\|chr1 (67333764-67334082)
	268-402, gnl\|rn3\|chr5 (121540122-121540435)