Non-Coding RNA Search

reep12c_c9.y1

Sequence:


               
               AGAACACCCAGGCACATCTGGATGGTTTTTATTTTTGTGGCCTTCGATTTTGTTTGCCCA
GATGCACACAGCTATTTTTATACTCTATTTGGTCTTGTTGAATTGTAGGTATTTCTGTAA
ATTGCCTTGAAGCATTTTGGGAGTAAGTGGGATAAAGGTAAGTAAATAAAGAAACATTGA
TTGCAAGTTCAAGGAAGTGAAACAATTTAACTGTATATACTAAACTAATGCAGTAAGATC
TAAACAAATGCAGTAAGAGCAAAGTCAAGAATACAGATGAACCCTTCAAAAGCACAAACT
TGAAAGCAGTAAGGTAAGCAATACATCAGTTTATAACCACCCTTCTACTCCAAATACAAC
GGCTTGCTGTTAGACCAAGGTGATGGTCCCTATTTTGTCTTTCCCCAAAAAGATGTCAAg
gagttcctgtcatgactcaggggaaacgaatctgactagcatccatgaggttgcaggttc
tatccctagcctcgcacagtgggctaaggat

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACACCCAGGCACATCTGGATGGTTTTTATTTTTGTGGCCTTCGATTTTGTTTGCCCA
GATGCACACAGCTATTTTTATACTCTATTTGGTCTTGTTGAATTGTAGGTATTTCTGTAA
ATTGCCTTGAAGCATTTTGGGAGTAAGTGGGATAAAGGTAAGTAAATAAAGAAACATTGA
TTGCAAGTTCAAGGAAGTGAAACAATTTAACTGTATATACTAAACTAATGCAGTAAGATC
TAAACAAATGCAGTAAGAGCAAAGTCAAGAATACAGATGAACCCTTCAAAAGCACAAACT
TGAAAGCAGTAAGGTAAGCAATACATCAGTTTATAACCACCCTTCTACTCCAAATACAAC
GGCTTGCTGTTAGACCAAGGTGATGGTCCCTATTTTGTCTTTCCCCAAAAAGATGTCAAg
gagttcctgtcatgactcaggggaaacgaatctgactagcatccatgaggttgcaggttc
tatccctagcctcgcacagtgggctaaggat

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-419, gnl|bosTau2|chr24 (29885081-29885491)
               

               
               1-419, gnl|canFam2|chr7 (79432002-79432700)
               

               
               1-419, gnl|dasNov1|scaffold_86035 (442-1114)
               

               
               1-419, gnl|echTel1|scaffold_290970 (8772-9432)
               

               
               1-419, gnl|hg17|chr18 (10500913-10501618)
               

               
               1-419, gnl|Hg17|chr18 (10501385-10500977)
               

               
               1-419, gnl|loxAfr1|scaffold_35655 (13141-13806)
               

               
               1-419, gnl|mm7|chr18 (63352817-63353460)
               

               
               1-419, gnl|Mm7|chr18 (63353221-63352852)
               

               
               1-419, gnl|oryCun1|scaffold_175601 (55823-55144)
               

               
               1-419, gnl|panTro1|chr17 (2161248-2160543)
               

               
               1-419, gnl|rheMac2|chr18 (3952315-3951618)
               

               
               1-419, gnl|rn3|chr18 (59177109-59177739)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-419, gnl|bosTau2|chr24 (29885081-29885491)
               

               
               1-419, gnl|canFam2|chr7 (79432002-79432700)
               

               
               1-419, gnl|dasNov1|scaffold_86035 (442-1114)
               

               
               1-419, gnl|echTel1|scaffold_290970 (8772-9432)
               

               
               1-419, gnl|hg17|chr18 (10500913-10501618)
               

               
               1-419, gnl|Hg17|chr18 (10501385-10500977)
               

               
               1-419, gnl|loxAfr1|scaffold_35655 (13141-13806)
               

               
               1-419, gnl|mm7|chr18 (63352817-63353460)
               

               
               1-419, gnl|Mm7|chr18 (63353221-63352852)
               

               
               1-419, gnl|oryCun1|scaffold_175601 (55823-55144)
               

               
               1-419, gnl|panTro1|chr17 (2161248-2160543)
               

               
               1-419, gnl|rheMac2|chr18 (3952315-3951618)
               

               
               1-419, gnl|rn3|chr18 (59177109-59177739)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-419, gnl\|bosTau2\|chr24 (29885081-29885491)
	1-419, gnl\|canFam2\|chr7 (79432002-79432700)
	1-419, gnl\|dasNov1\|scaffold_86035 (442-1114)
	1-419, gnl\|echTel1\|scaffold_290970 (8772-9432)
	1-419, gnl\|hg17\|chr18 (10500913-10501618)
	1-419, gnl\|Hg17\|chr18 (10501385-10500977)
	1-419, gnl\|loxAfr1\|scaffold_35655 (13141-13806)
	1-419, gnl\|mm7\|chr18 (63352817-63353460)
	1-419, gnl\|Mm7\|chr18 (63353221-63352852)
	1-419, gnl\|oryCun1\|scaffold_175601 (55823-55144)
	1-419, gnl\|panTro1\|chr17 (2161248-2160543)
	1-419, gnl\|rheMac2\|chr18 (3952315-3951618)
	1-419, gnl\|rn3\|chr18 (59177109-59177739)