Non-Coding RNA Search

reep12c_d23.y1

Sequence:


               
               CCCCACGCCCCTGCCTCGCGCGCTGCCCGCGCCATGAAGCACATCCCGGTTCTCGAGGAC
GGGCCGTGGAAGACCGTGTGCGTGAAGGAGCTGAACGGCCTCAAAAAGCTCAAGCGGAAA
GGCAAGGAGCCGGCGCGGCGCGCGAACGGCTATAAAACTTTCCGATTGGACTTGGAAGCG
CCCGAGCACGGCGCCACCGCCACCAACGGGCTGCGGGACAGGACCCAGCGGCTGCAGCCG
GTCCCGACCCCGGTGCCAGTCCGAGTGGCGCCGGCCGTTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCACGCCCCTGCCTCGCGCGCTGCCCGCGCCATGAAGCACATCCCGGTTCTCGAGGAC
GGGCCGTGGAAGACCGTGTGCGTGAAGGAGCTGAACGGCCTCAAAAAGCTCAAGCGGAAA
GGCAAGGAGCCGGCGCGGCGCGCGAACGGCTATAAAACTTTCCGATTGGACTTGGAAGCG
CCCGAGCACGGCGCCACCGCCACCAACGGGCTGCGGGACAGGACCCAGCGGCTGCAGCCG
GTCCCGACCCCGGTGCCAGTCCGAGTGGCGCCGGCCGTTCCC

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-282, gnl|bosTau2|chr11 (34176265-34175984)
               

               
               1-282, gnl|hg17|chr2 (85892939-85893193)
               

               
               1-282, gnl|Hg17|chr2 (85892938-85893225)
               

               
               1-282, gnl|loxAfr1|scaffold_37147 (2311-2577)
               

               
               1-282, gnl|mm7|chr6 (72253127-72252869)
               

               
               1-282, gnl|Mm7|chr6 (72253126-72252835)
               

               
               1-282, gnl|monDom2|scaffold_449 (37575-37829)
               

               
               1-282, gnl|oryCun1|scaffold_188892 (12976-13241)
               

               
               1-282, gnl|panTro1|chr12_random (30198406-30198660)
               

               
               1-282, gnl|rn3|chr4 (105776213-105775955)
               

               
               1-282, gnl|xenTro1|scaffold_149 (1352606-1352377)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-282, gnl|bosTau2|chr11 (34176265-34175984)
               

               
               1-282, gnl|hg17|chr2 (85892939-85893193)
               

               
               1-282, gnl|Hg17|chr2 (85892938-85893225)
               

               
               1-282, gnl|loxAfr1|scaffold_37147 (2311-2577)
               

               
               1-282, gnl|mm7|chr6 (72253127-72252869)
               

               
               1-282, gnl|Mm7|chr6 (72253126-72252835)
               

               
               1-282, gnl|monDom2|scaffold_449 (37575-37829)
               

               
               1-282, gnl|oryCun1|scaffold_188892 (12976-13241)
               

               
               1-282, gnl|panTro1|chr12_random (30198406-30198660)
               

               
               1-282, gnl|rn3|chr4 (105776213-105775955)
               

               
               1-282, gnl|xenTro1|scaffold_149 (1352606-1352377)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-282, gnl\|bosTau2\|chr11 (34176265-34175984)
	1-282, gnl\|hg17\|chr2 (85892939-85893193)
	1-282, gnl\|Hg17\|chr2 (85892938-85893225)
	1-282, gnl\|loxAfr1\|scaffold_37147 (2311-2577)
	1-282, gnl\|mm7\|chr6 (72253127-72252869)
	1-282, gnl\|Mm7\|chr6 (72253126-72252835)
	1-282, gnl\|monDom2\|scaffold_449 (37575-37829)
	1-282, gnl\|oryCun1\|scaffold_188892 (12976-13241)
	1-282, gnl\|panTro1\|chr12_random (30198406-30198660)
	1-282, gnl\|rn3\|chr4 (105776213-105775955)
	1-282, gnl\|xenTro1\|scaffold_149 (1352606-1352377)