Non-Coding RNA Search

reep12c_f8.y1

Sequence:


               
               AACAAACAAGGGCATCACCAGAGAGGGACTAGAGAAACAGGACAAGACCCAGAAGAGACT
GAATGGCTACACACAGAAACAGCCTGGAACATTCAGGGTGAGGATCATTTGATCTTCAAT
CAACTTTGATTTATCCTCATGGACCCGCCTGGCTTCACCATCTAGCTGTGTCTCCCAAGC
TACCACTCTGCGCACTCAGGCATCCCCTCCCCAGCAAGCAGAAGCTCTGCAGGCCCATCA
GAGGTCCTGGGAGATCAGAGTGCGAGTAGTGCAAAGTCTCTATTATTTAGGGAAATACAA
TGGCAACAGCAGAGCCACCCAGACCCCTGTTCACTTCCTCAGGCTTGGGAAAACCTTCAA
GCCTTCTCTGATGGACCCACTTCCTCCTCTCCCAAGCCTGGAACGTGGGAGCCCTTCACT
CTGGGATAACCCAGCTTCTTGTCTCCTAGAGCTAGGCCTTGGTAAACAAAAGCCCTATCT
GGGGGATGTATTTTGGTGCCTGGCAACCTCGAAGCCTCCCTCCCGACTCCCAAGCGAAAA
AGAAGGCAACATCCACAGCGAGAAGAACCAATATGCAAATTATAACCTCCGTGTGTTTCT
CTGCTTCATAGTCAGAGCCCTGTGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAAACAAGGGCATCACCAGAGAGGGACTAGAGAAACAGGACAAGACCCAGAAGAGACT
GAATGGCTACACACAGAAACAGCCTGGAACATTCAGGGTGAGGATCATTTGATCTTCAAT
CAACTTTGATTTATCCTCATGGACCCGCCTGGCTTCACCATCTAGCTGTGTCTCCCAAGC
TACCACTCTGCGCACTCAGGCATCCCCTCCCCAGCAAGCAGAAGCTCTGCAGGCCCATCA
GAGGTCCTGGGAGATCAGAGTGCGAGTAGTGCAAAGTCTCTATTATTTAGGGAAATACAA
TGGCAACAGCAGAGCCACCCAGACCCCTGTTCACTTCCTCAGGCTTGGGAAAACCTTCAA
GCCTTCTCTGATGGACCCACTTCCTCCTCTCCCAAGCCTGGAACGTGGGAGCCCTTCACT
CTGGGATAACCCAGCTTCTTGTCTCCTAGAGCTAGGCCTTGGTAAACAAAAGCCCTATCT
GGGGGATGTATTTTGGTGCCTGGCAACCTCGAAGCCTCCCTCCCGACTCCCAAGCGAAAA
AGAAGGCAACATCCACAGCGAGAAGAACCAATATGCAAATTATAACCTCCGTGTGTTTCT
CTGCTTCATAGTCAGAGCCCTGTGAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               311-505, + strand, RNAz p=0.998397

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-505, + strand, RNAz p=0.998397

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               80-565, gnl|bosTau2|chr3 (76704384-76703906)
               

               
               80-565, gnl|Hg17|chr1 (36341819-36342321)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-565, gnl|bosTau2|chr3 (76704384-76703906)
               

               
               80-565, gnl|Hg17|chr1 (36341819-36342321)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	80-565, gnl\|bosTau2\|chr3 (76704384-76703906)
	80-565, gnl\|Hg17\|chr1 (36341819-36342321)