Non-Coding RNA Search

reep13c_e24.y1

Sequence:


               
               GAGTCCAGCACTGCTCTGTGTGATGACAGCTTTACCGAACCCGAGCCCTGGGAGCAACAT
GTACACACACTCTCCGTACATAGAGGGACATGCAGATACAGACACACAGACCCTATGTCC
AAAGGTGTTACTGACATACATGCAAAAGTGTGCACGTGTGCGCATGCGCGCGCGCACGCA
CACACACACACACACACACACACACACACACACAATCGAAGCTGCGGGAAGACACTTCTA
TTCCTCGGACATCACTGAGTGAGCGGGGCAGGGAGGCAGAGGGGGCATCTCTGCCCGAAA
GAAGGCCCAGAGGCACACACTTTGGTTTGTGATGCTCCCAGGGGACGTGTCAGAGAGAAC
GTTTTCCAGCGTCCAAGCCCAAACTCTGCAGAGTGGAGCTTTCTGCAGGAGCTGCTAGAA
CCAGCCTGGTGTGGCAGACAGGAGCCAAAGCTCGAGGACTGTTCAGCCTCTCCAGCTGTG
TGACTTTATCCTTGGAGAGTATTGTTACACACCCATGATCCACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTCCAGCACTGCTCTGTGTGATGACAGCTTTACCGAACCCGAGCCCTGGGAGCAACAT
GTACACACACTCTCCGTACATAGAGGGACATGCAGATACAGACACACAGACCCTATGTCC
AAAGGTGTTACTGACATACATGCAAAAGTGTGCACGTGTGCGCATGCGCGCGCGCACGCA
CACACACACACACACACACACACACACACACACAATCGAAGCTGCGGGAAGACACTTCTA
TTCCTCGGACATCACTGAGTGAGCGGGGCAGGGAGGCAGAGGGGGCATCTCTGCCCGAAA
GAAGGCCCAGAGGCACACACTTTGGTTTGTGATGCTCCCAGGGGACGTGTCAGAGAGAAC
GTTTTCCAGCGTCCAAGCCCAAACTCTGCAGAGTGGAGCTTTCTGCAGGAGCTGCTAGAA
CCAGCCTGGTGTGGCAGACAGGAGCCAAAGCTCGAGGACTGTTCAGCCTCTCCAGCTGTG
TGACTTTATCCTTGGAGAGTATTGTTACACACCCATGATCCACAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               251-342, + strand, RNAz p=0.975221

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-342, + strand, RNAz p=0.975221

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-186, gnl|bosTau2|chr3 (75699418-75699597)
               

               
               1-186, gnl|Hg17|chr1 (37747486-37747266)
               

               
               1-186, gnl|Mm7|chr4 (124453216-124453383)
               


               
               199-516, gnl|bosTau2|chr3 (75699582-75699896)
               

               
               199-516, gnl|canFam2|chr15 (7886047-7885635)
               

               
               199-516, gnl|dasNov1|scaffold_79303 (2141-1757)
               

               
               199-516, gnl|echTel1|scaffold_318118 (48738-49122)
               

               
               199-516, gnl|galGal2|chr23 (3280932-3280511)
               

               
               199-516, gnl|hg17|chr1 (37746866-37747264)
               

               
               199-516, gnl|Hg17|chr1 (37747281-37746978)
               

               
               199-516, gnl|loxAfr1|scaffold_33754 (30163-29724)
               

               
               199-516, gnl|mm7|chr4 (124453784-124453397)
               

               
               199-516, gnl|monDom2|scaffold_43 (12018237-12017860)
               

               
               199-516, gnl|oryCun1|scaffold_201047 (121692-122090)
               

               
               199-516, gnl|panTro1|chr1 (38588203-38588601)
               

               
               199-516, gnl|rheMac2|chr1 (40475790-40476190)
               

               
               199-516, gnl|rn3|chr5 (144363690-144363311)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr3 (75699418-75699597)
               

               
               1-186, gnl|Hg17|chr1 (37747486-37747266)
               

               
               1-186, gnl|Mm7|chr4 (124453216-124453383)
               


               
               199-516, gnl|bosTau2|chr3 (75699582-75699896)
               

               
               199-516, gnl|canFam2|chr15 (7886047-7885635)
               

               
               199-516, gnl|dasNov1|scaffold_79303 (2141-1757)
               

               
               199-516, gnl|echTel1|scaffold_318118 (48738-49122)
               

               
               199-516, gnl|galGal2|chr23 (3280932-3280511)
               

               
               199-516, gnl|hg17|chr1 (37746866-37747264)
               

               
               199-516, gnl|Hg17|chr1 (37747281-37746978)
               

               
               199-516, gnl|loxAfr1|scaffold_33754 (30163-29724)
               

               
               199-516, gnl|mm7|chr4 (124453784-124453397)
               

               
               199-516, gnl|monDom2|scaffold_43 (12018237-12017860)
               

               
               199-516, gnl|oryCun1|scaffold_201047 (121692-122090)
               

               
               199-516, gnl|panTro1|chr1 (38588203-38588601)
               

               
               199-516, gnl|rheMac2|chr1 (40475790-40476190)
               

               
               199-516, gnl|rn3|chr5 (144363690-144363311)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-186, gnl\|bosTau2\|chr3 (75699418-75699597)
	1-186, gnl\|Hg17\|chr1 (37747486-37747266)
	1-186, gnl\|Mm7\|chr4 (124453216-124453383)

	199-516, gnl\|bosTau2\|chr3 (75699582-75699896)
	199-516, gnl\|canFam2\|chr15 (7886047-7885635)
	199-516, gnl\|dasNov1\|scaffold_79303 (2141-1757)
	199-516, gnl\|echTel1\|scaffold_318118 (48738-49122)
	199-516, gnl\|galGal2\|chr23 (3280932-3280511)
	199-516, gnl\|hg17\|chr1 (37746866-37747264)
	199-516, gnl\|Hg17\|chr1 (37747281-37746978)
	199-516, gnl\|loxAfr1\|scaffold_33754 (30163-29724)
	199-516, gnl\|mm7\|chr4 (124453784-124453397)
	199-516, gnl\|monDom2\|scaffold_43 (12018237-12017860)
	199-516, gnl\|oryCun1\|scaffold_201047 (121692-122090)
	199-516, gnl\|panTro1\|chr1 (38588203-38588601)
	199-516, gnl\|rheMac2\|chr1 (40475790-40476190)
	199-516, gnl\|rn3\|chr5 (144363690-144363311)