Non-Coding RNA Search

reep13c_i11.y1

Sequence:


               
               CCAGCGGCACATTCCCCCCCAGCTCCGGCTCGGACGCCTCTCCAGACACCTTGCAGCTAA
GTCACAGCACGGGCAACAGCAGCAGCCAGAGATCTTCCTATTATAGTCCCTTCCCGGCCA
GCACCAGTGGGGGGCAAAGCGGCCCCTTTGGCAGCCCTTTCTACAACTTCAGCGTGGTCA
ACAGCCTCATCTACCCCCGAGAGGGCTCTGAGGTATAGAGCACAGCGTGTTTCTTAGACC
TGAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCGGCACATTCCCCCCCAGCTCCGGCTCGGACGCCTCTCCAGACACCTTGCAGCTAA
GTCACAGCACGGGCAACAGCAGCAGCCAGAGATCTTCCTATTATAGTCCCTTCCCGGCCA
GCACCAGTGGGGGGCAAAGCGGCCCCTTTGGCAGCCCTTTCTACAACTTCAGCGTGGTCA
ACAGCCTCATCTACCCCCGAGAGGGCTCTGAGGTATAGAGCACAGCGTGTTTCTTAGACC
TGAATA

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               4-221, gnl|bosTau2|chr11 (36012819-36012602)
               

               
               4-221, gnl|canFam2|chr17 (41101278-41101055)
               

               
               4-221, gnl|danRer3|chrNA (22872975-22873148)
               

               
               4-221, gnl|dasNov1|scaffold_38711 (6501-6717)
               

               
               4-221, gnl|fr1|chrUn (225657266-225657467)
               

               
               4-221, gnl|galGal2|chr4 (86132736-86132938)
               

               
               4-221, gnl|hg17|chr2 (88586986-88587206)
               

               
               4-221, gnl|Hg17|chr2 (88587202-88586986)
               

               
               4-221, gnl|loxAfr1|scaffold_3990 (7582-7362)
               

               
               4-221, gnl|mm7|chr6 (70979067-70978857)
               

               
               4-221, gnl|Mm7|chr6 (70978857-70979077)
               

               
               4-221, gnl|monDom2|scaffold_63 (1557318-1557552)
               

               
               4-221, gnl|oryCun1|scaffold_190017 (5408-5188)
               

               
               4-221, gnl|panTro1|chr12 (91484536-91484756)
               

               
               4-221, gnl|rheMac2|chr13 (88963667-88963887)
               

               
               4-221, gnl|rn3|chr4 (104394195-104393985)
               

               
               4-221, gnl|tetNig1|chr10 (12225897-12226099)
               

               
               4-221, gnl|xenTro1|scaffold_149 (1043122-1042931)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-221, gnl|bosTau2|chr11 (36012819-36012602)
               

               
               4-221, gnl|canFam2|chr17 (41101278-41101055)
               

               
               4-221, gnl|danRer3|chrNA (22872975-22873148)
               

               
               4-221, gnl|dasNov1|scaffold_38711 (6501-6717)
               

               
               4-221, gnl|fr1|chrUn (225657266-225657467)
               

               
               4-221, gnl|galGal2|chr4 (86132736-86132938)
               

               
               4-221, gnl|hg17|chr2 (88586986-88587206)
               

               
               4-221, gnl|Hg17|chr2 (88587202-88586986)
               

               
               4-221, gnl|loxAfr1|scaffold_3990 (7582-7362)
               

               
               4-221, gnl|mm7|chr6 (70979067-70978857)
               

               
               4-221, gnl|Mm7|chr6 (70978857-70979077)
               

               
               4-221, gnl|monDom2|scaffold_63 (1557318-1557552)
               

               
               4-221, gnl|oryCun1|scaffold_190017 (5408-5188)
               

               
               4-221, gnl|panTro1|chr12 (91484536-91484756)
               

               
               4-221, gnl|rheMac2|chr13 (88963667-88963887)
               

               
               4-221, gnl|rn3|chr4 (104394195-104393985)
               

               
               4-221, gnl|tetNig1|chr10 (12225897-12226099)
               

               
               4-221, gnl|xenTro1|scaffold_149 (1043122-1042931)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	4-221, gnl\|bosTau2\|chr11 (36012819-36012602)
	4-221, gnl\|canFam2\|chr17 (41101278-41101055)
	4-221, gnl\|danRer3\|chrNA (22872975-22873148)
	4-221, gnl\|dasNov1\|scaffold_38711 (6501-6717)
	4-221, gnl\|fr1\|chrUn (225657266-225657467)
	4-221, gnl\|galGal2\|chr4 (86132736-86132938)
	4-221, gnl\|hg17\|chr2 (88586986-88587206)
	4-221, gnl\|Hg17\|chr2 (88587202-88586986)
	4-221, gnl\|loxAfr1\|scaffold_3990 (7582-7362)
	4-221, gnl\|mm7\|chr6 (70979067-70978857)
	4-221, gnl\|Mm7\|chr6 (70978857-70979077)
	4-221, gnl\|monDom2\|scaffold_63 (1557318-1557552)
	4-221, gnl\|oryCun1\|scaffold_190017 (5408-5188)
	4-221, gnl\|panTro1\|chr12 (91484536-91484756)
	4-221, gnl\|rheMac2\|chr13 (88963667-88963887)
	4-221, gnl\|rn3\|chr4 (104394195-104393985)
	4-221, gnl\|tetNig1\|chr10 (12225897-12226099)
	4-221, gnl\|xenTro1\|scaffold_149 (1043122-1042931)