Non-Coding RNA Search

reep13c_i16.y1

Sequence:


               
               GGCCTCTCTTAAGACTCGGTCTCTCTTGTTTCTTGGAGGTCAGGTTGCCAAACTTTTCCA
GGACTCAAGTCTGGGAAACATCGTTAATATCCTGGTAACACGCCTCATCCTGCTTACAGA
GGACCAGCCCACCCTGGAGATCACTCACCATGCCGGAAAGTCCCTGGACAGCTTCTGTAA
GTGGCAAAAATCCATCGTGAACCGCAGCGGCCATGGCAATGCCATTCCGGAGAACGGCGT
GGCCAACCATGACACAGCAGTGCTCATCACGCGCTATGACATCTGCATCTACAAGAACAA
ACCCTGCGGCACACTAGGTACCCGGGCCCCCTAGGTTTCAGGCACCTCTGAAGGCAGTGG
GCTGGGTGACACTGGCCCTGGTCGGGGGTGGGGACCTGGCTGACAGATACAGTGGACAGG
GCTGACAGATACAGCCCTGAGCCCCCAGCCCCACCCCCACATGCCTGTTCCCCAGGCCTG
GCCCCCGTGGGCGGGATGTGTGAGCGCGAAAGAAGTTGTAGCATCAATGAGGACATCGGC
CTGGCCACGGCATTCACCATCGCCCATGAGATCGGACACACGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCTCTCTTAAGACTCGGTCTCTCTTGTTTCTTGGAGGTCAGGTTGCCAAACTTTTCCA
GGACTCAAGTCTGGGAAACATCGTTAATATCCTGGTAACACGCCTCATCCTGCTTACAGA
GGACCAGCCCACCCTGGAGATCACTCACCATGCCGGAAAGTCCCTGGACAGCTTCTGTAA
GTGGCAAAAATCCATCGTGAACCGCAGCGGCCATGGCAATGCCATTCCGGAGAACGGCGT
GGCCAACCATGACACAGCAGTGCTCATCACGCGCTATGACATCTGCATCTACAAGAACAA
ACCCTGCGGCACACTAGGTACCCGGGCCCCCTAGGTTTCAGGCACCTCTGAAGGCAGTGG
GCTGGGTGACACTGGCCCTGGTCGGGGGTGGGGACCTGGCTGACAGATACAGTGGACAGG
GCTGACAGATACAGCCCTGAGCCCCCAGCCCCACCCCCACATGCCTGTTCCCCAGGCCTG
GCCCCCGTGGGCGGGATGTGTGAGCGCGAAAGAAGTTGTAGCATCAATGAGGACATCGGC
CTGGCCACGGCATTCACCATCGCCCATGAGATCGGACACACGTTT

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-127, gnl|bosTau2|chr7 (14306819-14306693)
               

               
               1-127, gnl|canFam2|chr20 (56103858-56104014)
               

               
               1-127, gnl|danRer3|chr8 (11938177-11938030)
               

               
               1-127, gnl|dasNov1|scaffold_116236 (9935-10091)
               

               
               1-127, gnl|echTel1|scaffold_270659 (14602-14771)
               

               
               1-127, gnl|fr1|chrUn (126771938-126772070)
               

               
               1-127, gnl|galGal2|chr28 (1688314-1688136)
               

               
               1-127, gnl|hg17|chr19 (8568106-8568269)
               

               
               1-127, gnl|Hg17|chr19 (8568244-8568118)
               

               
               1-127, gnl|loxAfr1|scaffold_63374 (3424-3586)
               

               
               1-127, gnl|mm7|chr17 (31612545-31612380)
               

               
               1-127, gnl|Mm7|chr17 (31612399-31612525)
               

               
               1-127, gnl|monDom2|scaffold_136 (107973-107811)
               

               
               1-127, gnl|oryCun1|scaffold_211337 (3043-3192)
               

               
               1-127, gnl|panTro1|chr20 (8921847-8922010)
               

               
               1-127, gnl|rheMac2|chr19 (8584434-8584597)
               

               
               1-127, gnl|rn3|chr7 (16056291-16056126)
               

               
               1-127, gnl|tetNig1|chr1 (15302386-15302263)
               

               
               1-127, gnl|xenTro1|scaffold_87 (1568487-1568365)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-127, gnl|bosTau2|chr7 (14306819-14306693)
               

               
               1-127, gnl|canFam2|chr20 (56103858-56104014)
               

               
               1-127, gnl|danRer3|chr8 (11938177-11938030)
               

               
               1-127, gnl|dasNov1|scaffold_116236 (9935-10091)
               

               
               1-127, gnl|echTel1|scaffold_270659 (14602-14771)
               

               
               1-127, gnl|fr1|chrUn (126771938-126772070)
               

               
               1-127, gnl|galGal2|chr28 (1688314-1688136)
               

               
               1-127, gnl|hg17|chr19 (8568106-8568269)
               

               
               1-127, gnl|Hg17|chr19 (8568244-8568118)
               

               
               1-127, gnl|loxAfr1|scaffold_63374 (3424-3586)
               

               
               1-127, gnl|mm7|chr17 (31612545-31612380)
               

               
               1-127, gnl|Mm7|chr17 (31612399-31612525)
               

               
               1-127, gnl|monDom2|scaffold_136 (107973-107811)
               

               
               1-127, gnl|oryCun1|scaffold_211337 (3043-3192)
               

               
               1-127, gnl|panTro1|chr20 (8921847-8922010)
               

               
               1-127, gnl|rheMac2|chr19 (8584434-8584597)
               

               
               1-127, gnl|rn3|chr7 (16056291-16056126)
               

               
               1-127, gnl|tetNig1|chr1 (15302386-15302263)
               

               
               1-127, gnl|xenTro1|scaffold_87 (1568487-1568365)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-127, gnl\|bosTau2\|chr7 (14306819-14306693)
	1-127, gnl\|canFam2\|chr20 (56103858-56104014)
	1-127, gnl\|danRer3\|chr8 (11938177-11938030)
	1-127, gnl\|dasNov1\|scaffold_116236 (9935-10091)
	1-127, gnl\|echTel1\|scaffold_270659 (14602-14771)
	1-127, gnl\|fr1\|chrUn (126771938-126772070)
	1-127, gnl\|galGal2\|chr28 (1688314-1688136)
	1-127, gnl\|hg17\|chr19 (8568106-8568269)
	1-127, gnl\|Hg17\|chr19 (8568244-8568118)
	1-127, gnl\|loxAfr1\|scaffold_63374 (3424-3586)
	1-127, gnl\|mm7\|chr17 (31612545-31612380)
	1-127, gnl\|Mm7\|chr17 (31612399-31612525)
	1-127, gnl\|monDom2\|scaffold_136 (107973-107811)
	1-127, gnl\|oryCun1\|scaffold_211337 (3043-3192)
	1-127, gnl\|panTro1\|chr20 (8921847-8922010)
	1-127, gnl\|rheMac2\|chr19 (8584434-8584597)
	1-127, gnl\|rn3\|chr7 (16056291-16056126)
	1-127, gnl\|tetNig1\|chr1 (15302386-15302263)
	1-127, gnl\|xenTro1\|scaffold_87 (1568487-1568365)