Non-Coding RNA Search

reep13c_k14.y1

Sequence:


               
               CCAAGGCAGGCCAGGTGACCTGAAAGGGGCCATCCAAGGGGGAGCAGAGGAGTCTGAAAG
CTAGTCTGGCTGGGCTTCTCAGCCCTCAACTCCATCCCTGACTCCAGACAGCTGGGGAGC
AGCCGGCAGAGCAGGCCTGGAGCATGAGCAGTTGCTGCCCAGTGGTGATTAGAAAGAGCC
CATTCAGTGGCTCCCTCACACGCGCACCCTTCCCCTGCACACACCCCCTCCCCTGGACAC
CTCCCACAGAGAGCCCTTTGTATCCCCCACACAACAGCACGTCTGTTCGAGGCCAGCACT
GGCTATAGAGAAAGCCCCTCCTCTTGGAAAGAACGAGCGACTTATTGGAATCACAGGCTA
GCTTGGAGCACGTGCGGAACCTGCCAGCGGCCAAGTGGGAGGGGCGGCTGGGGCCAGGCT
TGGCTCTGGGGTGGATGGCAATGGCTGGAGAAGCAAATCCCCTAGGCAGAGGCACTCAGG
CTGGAGACTGGTGCTCCCTTCTTAGTGAAGTGTTATCAGCTGTGCCCTCAGCCTTACCAA
GTGGCCCCAGGTCTCCTGTGGCTGTCCTGGGGTGTCCAAGATAAGTCAGGCTGCCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAGGCAGGCCAGGTGACCTGAAAGGGGCCATCCAAGGGGGAGCAGAGGAGTCTGAAAG
CTAGTCTGGCTGGGCTTCTCAGCCCTCAACTCCATCCCTGACTCCAGACAGCTGGGGAGC
AGCCGGCAGAGCAGGCCTGGAGCATGAGCAGTTGCTGCCCAGTGGTGATTAGAAAGAGCC
CATTCAGTGGCTCCCTCACACGCGCACCCTTCCCCTGCACACACCCCCTCCCCTGGACAC
CTCCCACAGAGAGCCCTTTGTATCCCCCACACAACAGCACGTCTGTTCGAGGCCAGCACT
GGCTATAGAGAAAGCCCCTCCTCTTGGAAAGAACGAGCGACTTATTGGAATCACAGGCTA
GCTTGGAGCACGTGCGGAACCTGCCAGCGGCCAAGTGGGAGGGGCGGCTGGGGCCAGGCT
TGGCTCTGGGGTGGATGGCAATGGCTGGAGAAGCAAATCCCCTAGGCAGAGGCACTCAGG
CTGGAGACTGGTGCTCCCTTCTTAGTGAAGTGTTATCAGCTGTGCCCTCAGCCTTACCAA
GTGGCCCCAGGTCTCCTGTGGCTGTCCTGGGGTGTCCAAGATAAGTCAGGCTGCCCCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               200-356, - strand, RNAz p=0.714936
               

               
               397-513, + strand, RNAz p=0.746054

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-356, - strand, RNAz p=0.714936
               

               
               397-513, + strand, RNAz p=0.746054

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               121-220, - strand, RNAmicro p=0.987916

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               121-220, - strand, RNAmicro p=0.987916

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               90-587, gnl|bosTau2|chr1 (88093289-88092803)
               

               
               90-587, gnl|Hg17|chr3 (135568877-135568377)
               

               
               90-587, gnl|Mm7|chr9 (102416186-102416651)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-587, gnl|bosTau2|chr1 (88093289-88092803)
               

               
               90-587, gnl|Hg17|chr3 (135568877-135568377)
               

               
               90-587, gnl|Mm7|chr9 (102416186-102416651)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	200-356, - strand, RNAz p=0.714936
	397-513, + strand, RNAz p=0.746054

	90-587, gnl\|bosTau2\|chr1 (88093289-88092803)
	90-587, gnl\|Hg17\|chr3 (135568877-135568377)
	90-587, gnl\|Mm7\|chr9 (102416186-102416651)