Non-Coding RNA Search

reep14c_j11.y1

Sequence:


               
               CACGCAAAGTGGATCCTGGACACAGACACCTTCAATGAATGGATGAATGAGGAAGACTAT
GAAGTGAATGATGACAAAAACCCTGTCTCGCGCCGAAAGAAGATATCAGCCAAGACATTG
ACAGACGAGGTGAACAGCCCAGATTCAGATCGACGGGACAAGAAAGGAGGGAACTATAAG
AAGCGGAAACGCTCCCCCTCTCCTTCACCGACCCCAGAAGCTAAGAAGAAGAATGCCAAG
AAAGGTCCCTCAACACCTTACACCAAGTCAAAGCGTGGCCACAGAGAAGAGGAGCAAGAA
GACCTGACAAAGGACATGGATGAGCCCTCACCGGTTCCCAATGTGGAAGAGGTGACGTTG
CCCAAAACAGGTATGGGCCCAGCCAAGCTCCTGGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGCAAAGTGGATCCTGGACACAGACACCTTCAATGAATGGATGAATGAGGAAGACTAT
GAAGTGAATGATGACAAAAACCCTGTCTCGCGCCGAAAGAAGATATCAGCCAAGACATTG
ACAGACGAGGTGAACAGCCCAGATTCAGATCGACGGGACAAGAAAGGAGGGAACTATAAG
AAGCGGAAACGCTCCCCCTCTCCTTCACCGACCCCAGAAGCTAAGAAGAAGAATGCCAAG
AAAGGTCCCTCAACACCTTACACCAAGTCAAAGCGTGGCCACAGAGAAGAGGAGCAAGAA
GACCTGACAAAGGACATGGATGAGCCCTCACCGGTTCCCAATGTGGAAGAGGTGACGTTG
CCCAAAACAGGTATGGGCCCAGCCAAGCTCCTGGACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               284-394, - strand, RNAz p=0.935632

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               284-394, - strand, RNAz p=0.935632

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-134, gnl|bosTau2|chr5 (33442145-33442278)
               

               
               1-134, gnl|canFam2|chr10 (3478931-3479080)
               

               
               1-134, gnl|danRer3|chr6 (20431067-20431196)
               

               
               1-134, gnl|dasNov1|scaffold_11065 (9196-9348)
               

               
               1-134, gnl|echTel1|scaffold_325469 (96126-96276)
               

               
               1-134, gnl|fr1|chrUn (40803823-40803686)
               

               
               1-134, gnl|hg17|chr12 (54861741-54861890)
               

               
               1-134, gnl|Hg17|chr12 (54861883-54861750)
               

               
               1-134, gnl|loxAfr1|scaffold_1805 (107084-106935)
               

               
               1-134, gnl|mm7|chr10 (127970580-127970434)
               

               
               1-134, gnl|Mm7|chr10 (127970439-127970570)
               

               
               1-134, gnl|oryCun1|scaffold_213038 (5174-5027)
               

               
               1-134, gnl|panTro1|chr10 (56111110-56111259)
               

               
               1-134, gnl|rheMac2|chr11 (53240278-53240427)
               

               
               1-134, gnl|rn3|chr7 (1752166-1752024)
               

               
               1-134, gnl|tetNig1|chr11 (6612420-6612559)
               

               
               1-134, gnl|xenTro1|scaffold_85 (2250278-2250427)
               


               
               245-394, gnl|bosTau2|chr5 (33443744-33443893)
               

               
               245-394, gnl|Hg17|chr12 (54861153-54860928)
               

               
               245-394, gnl|Mm7|chr10 (127971094-127971243)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-134, gnl|bosTau2|chr5 (33442145-33442278)
               

               
               1-134, gnl|canFam2|chr10 (3478931-3479080)
               

               
               1-134, gnl|danRer3|chr6 (20431067-20431196)
               

               
               1-134, gnl|dasNov1|scaffold_11065 (9196-9348)
               

               
               1-134, gnl|echTel1|scaffold_325469 (96126-96276)
               

               
               1-134, gnl|fr1|chrUn (40803823-40803686)
               

               
               1-134, gnl|hg17|chr12 (54861741-54861890)
               

               
               1-134, gnl|Hg17|chr12 (54861883-54861750)
               

               
               1-134, gnl|loxAfr1|scaffold_1805 (107084-106935)
               

               
               1-134, gnl|mm7|chr10 (127970580-127970434)
               

               
               1-134, gnl|Mm7|chr10 (127970439-127970570)
               

               
               1-134, gnl|oryCun1|scaffold_213038 (5174-5027)
               

               
               1-134, gnl|panTro1|chr10 (56111110-56111259)
               

               
               1-134, gnl|rheMac2|chr11 (53240278-53240427)
               

               
               1-134, gnl|rn3|chr7 (1752166-1752024)
               

               
               1-134, gnl|tetNig1|chr11 (6612420-6612559)
               

               
               1-134, gnl|xenTro1|scaffold_85 (2250278-2250427)
               


               
               245-394, gnl|bosTau2|chr5 (33443744-33443893)
               

               
               245-394, gnl|Hg17|chr12 (54861153-54860928)
               

               
               245-394, gnl|Mm7|chr10 (127971094-127971243)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-134, gnl\|bosTau2\|chr5 (33442145-33442278)
	1-134, gnl\|canFam2\|chr10 (3478931-3479080)
	1-134, gnl\|danRer3\|chr6 (20431067-20431196)
	1-134, gnl\|dasNov1\|scaffold_11065 (9196-9348)
	1-134, gnl\|echTel1\|scaffold_325469 (96126-96276)
	1-134, gnl\|fr1\|chrUn (40803823-40803686)
	1-134, gnl\|hg17\|chr12 (54861741-54861890)
	1-134, gnl\|Hg17\|chr12 (54861883-54861750)
	1-134, gnl\|loxAfr1\|scaffold_1805 (107084-106935)
	1-134, gnl\|mm7\|chr10 (127970580-127970434)
	1-134, gnl\|Mm7\|chr10 (127970439-127970570)
	1-134, gnl\|oryCun1\|scaffold_213038 (5174-5027)
	1-134, gnl\|panTro1\|chr10 (56111110-56111259)
	1-134, gnl\|rheMac2\|chr11 (53240278-53240427)
	1-134, gnl\|rn3\|chr7 (1752166-1752024)
	1-134, gnl\|tetNig1\|chr11 (6612420-6612559)
	1-134, gnl\|xenTro1\|scaffold_85 (2250278-2250427)

	245-394, gnl\|bosTau2\|chr5 (33443744-33443893)
	245-394, gnl\|Hg17\|chr12 (54861153-54860928)
	245-394, gnl\|Mm7\|chr10 (127971094-127971243)