Non-Coding RNA Search

reep15c_k8.y1

Sequence:


               
               CTGAAGGGTTCAGCGGGGGTGTCCACGAAGGGGAACTGGTGACTTGACATGTCCTTTCAG
CTCAGGTTCCTGATGTCTCACATTTTTCTGGCGTTGTGTGGGAAAACGAAAGCATCACTT
GCCCTGGTTGCTAGTTTGATCTTTTCTCTCAGGCCCAAACACGCAGCTGACTGCCATCCA
TCCTTTTTAGTGCCACGGTTTTGATTCATCCTTTTAAAGGGGTTTAGAGTGGCAGTGTGA
CACACAAAACGTACTTCAGTATGAAATGTTAGAAGTTATCCCCAGGAGACACAGTGTCCC
CTGGTCCTGCAGTTTTCAGTTCAAGGTAAACCCATAGTTGTTTCAGATTTTCCTTTTCTT
TACTGACTTTCCATTTTGCAAATGTCCAAAGCCAGGAGGATGTTCGTGTGGGCCAGAGTT
ATAAATGGCTGGATATCCTTGAGAGTTCACGGTTCCTGCAGCATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAAGGGTTCAGCGGGGGTGTCCACGAAGGGGAACTGGTGACTTGACATGTCCTTTCAG
CTCAGGTTCCTGATGTCTCACATTTTTCTGGCGTTGTGTGGGAAAACGAAAGCATCACTT
GCCCTGGTTGCTAGTTTGATCTTTTCTCTCAGGCCCAAACACGCAGCTGACTGCCATCCA
TCCTTTTTAGTGCCACGGTTTTGATTCATCCTTTTAAAGGGGTTTAGAGTGGCAGTGTGA
CACACAAAACGTACTTCAGTATGAAATGTTAGAAGTTATCCCCAGGAGACACAGTGTCCC
CTGGTCCTGCAGTTTTCAGTTCAAGGTAAACCCATAGTTGTTTCAGATTTTCCTTTTCTT
TACTGACTTTCCATTTTGCAAATGTCCAAAGCCAGGAGGATGTTCGTGTGGGCCAGAGTT
ATAAATGGCTGGATATCCTTGAGAGTTCACGGTTCCTGCAGCATCA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-466, gnl|bosTau2|chr5 (18803668-18803202)
               

               
               1-466, gnl|canFam2|chr27 (6751505-6750826)
               

               
               1-466, gnl|dasNov1|scaffold_11050 (10473-11031)
               

               
               1-466, gnl|echTel1|scaffold_299387 (3778-3212)
               

               
               1-466, gnl|hg17|chr12 (49762335-49762903)
               

               
               1-466, gnl|Hg17|chr12 (49762895-49762448)
               

               
               1-466, gnl|mm7|chr15 (100479288-100479854)
               

               
               1-466, gnl|Mm7|chr15 (100479846-100479395)
               

               
               1-466, gnl|oryCun1|scaffold_213545 (44565-45141)
               

               
               1-466, gnl|panTro1|chr10 (50981122-50981690)
               

               
               1-466, gnl|rheMac2|chr11 (48229219-48229786)
               

               
               1-466, gnl|rn3|chr7 (139273043-139273633)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-466, gnl|bosTau2|chr5 (18803668-18803202)
               

               
               1-466, gnl|canFam2|chr27 (6751505-6750826)
               

               
               1-466, gnl|dasNov1|scaffold_11050 (10473-11031)
               

               
               1-466, gnl|echTel1|scaffold_299387 (3778-3212)
               

               
               1-466, gnl|hg17|chr12 (49762335-49762903)
               

               
               1-466, gnl|Hg17|chr12 (49762895-49762448)
               

               
               1-466, gnl|mm7|chr15 (100479288-100479854)
               

               
               1-466, gnl|Mm7|chr15 (100479846-100479395)
               

               
               1-466, gnl|oryCun1|scaffold_213545 (44565-45141)
               

               
               1-466, gnl|panTro1|chr10 (50981122-50981690)
               

               
               1-466, gnl|rheMac2|chr11 (48229219-48229786)
               

               
               1-466, gnl|rn3|chr7 (139273043-139273633)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-466, gnl\|bosTau2\|chr5 (18803668-18803202)
	1-466, gnl\|canFam2\|chr27 (6751505-6750826)
	1-466, gnl\|dasNov1\|scaffold_11050 (10473-11031)
	1-466, gnl\|echTel1\|scaffold_299387 (3778-3212)
	1-466, gnl\|hg17\|chr12 (49762335-49762903)
	1-466, gnl\|Hg17\|chr12 (49762895-49762448)
	1-466, gnl\|mm7\|chr15 (100479288-100479854)
	1-466, gnl\|Mm7\|chr15 (100479846-100479395)
	1-466, gnl\|oryCun1\|scaffold_213545 (44565-45141)
	1-466, gnl\|panTro1\|chr10 (50981122-50981690)
	1-466, gnl\|rheMac2\|chr11 (48229219-48229786)
	1-466, gnl\|rn3\|chr7 (139273043-139273633)