reep15c_n19.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACAGTCCTTCCATCTGAAGCCACCCCTGGAGAAGCCAACCCCATCCCCACCAGTCAAC GGCCTGGCAGCCCCACTGGCATACCCCAATGGCCACTACTTCCAGCCCCTGTGGAACAAC ATTCTGCCCACTCCCAATAGCGACAGCTCGGGGTCTCAGGACCTCGCCGTGCCGTTCCAC GGTGGGCAGCCTGCGGGCGCACCCCTCGACTGTGCGGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACAGTCCTTCCATCTGAAGCCACCCCTGGAGAAGCCAACCCCATCCCCACCAGTCAAC GGCCTGGCAGCCCCACTGGCATACCCCAATGGCCACTACTTCCAGCCCCTGTGGAACAAC ATTCTGCCCACTCCCAATAGCGACAGCTCGGGGTCTCAGGACCTCGCCGTGCCGTTCCAC GGTGGGCAGCCTGCGGGCGCACCCCTCGACTGTGCGGCG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-199, - strand, RNAz p=0.86803 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-199, - strand, RNAz p=0.86803 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-219, gnl|bosTau2|chr19 (13715133-13714915) | |
| 1-219, gnl|canFam2|chr26 (20366740-20366570) | |
| 1-219, gnl|canFam2|chr9 (46270546-46270997) | |
| 1-219, gnl|danRer3|chr15 (12961998-12962409) | |
| 1-219, gnl|danRer3|chr5 (9928756-9928928) | |
| 1-219, gnl|echTel1|scaffold_246198 (6088-6519) | |
| 1-219, gnl|fr1|chrUn (186675746-186676191) | |
| 1-219, gnl|fr1|chrUn (1774585-1774748) | |
| 1-219, gnl|galGal2|chr15 (6798224-6798367) | |
| 1-219, gnl|galGal2|chr19 (5450194-5450624) | |
| 1-219, gnl|hg17|chr12 (108669435-108669605) | |
| 1-219, gnl|hg17|chr17 (24109598-24110049) | |
| 1-219, gnl|Hg17|chr17 (24109855-24109638) | |
| 1-219, gnl|loxAfr1|scaffold_42573 (11252-11081) | |
| 1-219, gnl|mm7|chr11 (78236697-78236246) | |
| 1-219, gnl|Mm7|chr11 (78236438-78236655) | |
| 1-219, gnl|mm7|chr5 (113832560-113832730) | |
| 1-219, gnl|monDom2|scaffold_192 (598674-598525) | |
| 1-219, gnl|monDom2|scaffold_44 (14704850-14705296) | |
| 1-219, gnl|oryCun1|scaffold_184143 (10939-11106) | |
| 1-219, gnl|panTro1|chr10 (111259983-111260153) | |
| 1-219, gnl|panTro1|chr19 (27451904-27452355) | |
| 1-219, gnl|rheMac2|chr11 (110774319-110774489) | |
| 1-219, gnl|rheMac2|chr16 (23962018-23962469) | |
| 1-219, gnl|rn3|chr10 (64494990-64495441) | |
| 1-219, gnl|rn3|chr12 (43140088-43139918) | |
| 1-219, gnl|tetNig1|chr12 (6367226-6367395) | |
| 1-219, gnl|tetNig1|chr7 (2174625-2175037) | |
| 1-219, gnl|xenTro1|scaffold_50 (983257-982833) | |
| 1-219, gnl|xenTro1|scaffold_9 (450407-450553) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-219, gnl|bosTau2|chr19 (13715133-13714915) | |
| 1-219, gnl|canFam2|chr26 (20366740-20366570) | |
| 1-219, gnl|canFam2|chr9 (46270546-46270997) | |
| 1-219, gnl|danRer3|chr15 (12961998-12962409) | |
| 1-219, gnl|danRer3|chr5 (9928756-9928928) | |
| 1-219, gnl|echTel1|scaffold_246198 (6088-6519) | |
| 1-219, gnl|fr1|chrUn (186675746-186676191) | |
| 1-219, gnl|fr1|chrUn (1774585-1774748) | |
| 1-219, gnl|galGal2|chr15 (6798224-6798367) | |
| 1-219, gnl|galGal2|chr19 (5450194-5450624) | |
| 1-219, gnl|hg17|chr12 (108669435-108669605) | |
| 1-219, gnl|hg17|chr17 (24109598-24110049) | |
| 1-219, gnl|Hg17|chr17 (24109855-24109638) | |
| 1-219, gnl|loxAfr1|scaffold_42573 (11252-11081) | |
| 1-219, gnl|mm7|chr11 (78236697-78236246) | |
| 1-219, gnl|Mm7|chr11 (78236438-78236655) | |
| 1-219, gnl|mm7|chr5 (113832560-113832730) | |
| 1-219, gnl|monDom2|scaffold_192 (598674-598525) | |
| 1-219, gnl|monDom2|scaffold_44 (14704850-14705296) | |
| 1-219, gnl|oryCun1|scaffold_184143 (10939-11106) | |
| 1-219, gnl|panTro1|chr10 (111259983-111260153) | |
| 1-219, gnl|panTro1|chr19 (27451904-27452355) | |
| 1-219, gnl|rheMac2|chr11 (110774319-110774489) | |
| 1-219, gnl|rheMac2|chr16 (23962018-23962469) | |
| 1-219, gnl|rn3|chr10 (64494990-64495441) | |
| 1-219, gnl|rn3|chr12 (43140088-43139918) | |
| 1-219, gnl|tetNig1|chr12 (6367226-6367395) | |
| 1-219, gnl|tetNig1|chr7 (2174625-2175037) | |
| 1-219, gnl|xenTro1|scaffold_50 (983257-982833) | |
| 1-219, gnl|xenTro1|scaffold_9 (450407-450553) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |