Non-Coding RNA Search

reep15c_p11.y1

Sequence:


               
               GGGGGTGGGGGGTGAAGCCGGCCACTGACCAGGCCATGCATTGGAGAGAATCGTGTCGCT
GTGGAGTTCCTGCAGCCACCTGACTGGCCACAGCGCATCCCCCCAGAGGGGGACAGTGTC
AGGCAGGGGCCACCGTCTACACCTCAGCTTGCCTGGGCCGGCCAACTGCTGACTCACCGG
AGGGTGTTCGAGGACAGCAAGAAAAATGAGGGACTTTCAGGGGCAGCTGTGTTTTCTGAC
TCAGTCATAATGCCCCTAAAAATCCTTATTGTTCTTGCAGTGTTCATCGGGCAGCAGCAC
CTGCCTGCCCCTGCCCACCTGGTGGCTCTGGGACGCGAAGGGCCCCCCGGGATCTGGTTG
GGGTGTCCTCCCCCCATCCTTCGGAAATGAGACGAAGGGGGACGTGCTGAGGATGACAGC
ATTTAGTTGGGCAGTGCGCTGAGTTGCGTGTGCTTTTATCATTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGTGGGGGGTGAAGCCGGCCACTGACCAGGCCATGCATTGGAGAGAATCGTGTCGCT
GTGGAGTTCCTGCAGCCACCTGACTGGCCACAGCGCATCCCCCCAGAGGGGGACAGTGTC
AGGCAGGGGCCACCGTCTACACCTCAGCTTGCCTGGGCCGGCCAACTGCTGACTCACCGG
AGGGTGTTCGAGGACAGCAAGAAAAATGAGGGACTTTCAGGGGCAGCTGTGTTTTCTGAC
TCAGTCATAATGCCCCTAAAAATCCTTATTGTTCTTGCAGTGTTCATCGGGCAGCAGCAC
CTGCCTGCCCCTGCCCACCTGGTGGCTCTGGGACGCGAAGGGCCCCCCGGGATCTGGTTG
GGGTGTCCTCCCCCCATCCTTCGGAAATGAGACGAAGGGGGACGTGCTGAGGATGACAGC
ATTTAGTTGGGCAGTGCGCTGAGTTGCGTGTGCTTTTATCATTTCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               150-303, + strand, RNAz p=0.990737

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               150-303, + strand, RNAz p=0.990737

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               196-315, - strand, RNAmicro p=0.99999
               

               
               194-314, + strand, RNAmicro p=0.999726

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               196-315, - strand, RNAmicro p=0.99999
               

               
               194-314, + strand, RNAmicro p=0.999726

ncRNA annotation: 1 entry(ies)

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ncRNA annotation: 1 entry(ies)

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               184-291, MI0001647 (cfa-mir-365-2), blast E-value=0

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               184-291, MI0001647 (cfa-mir-365-2), blast E-value=0

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-467, gnl|bosTau2|chr19 (10054150-10054620)
               

               
               1-467, gnl|Hg17|chr17 (26926352-26926807)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-467, gnl|bosTau2|chr19 (10054150-10054620)
               

               
               1-467, gnl|Hg17|chr17 (26926352-26926807)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	196-315, - strand, RNAmicro p=0.99999
	194-314, + strand, RNAmicro p=0.999726

	1-467, gnl\|bosTau2\|chr19 (10054150-10054620)
	1-467, gnl\|Hg17\|chr17 (26926352-26926807)