Non-Coding RNA Search

reep17c_c11.y1

Sequence:


               
               CAAGATAGTGACTTAAAAACATCTGATGCCTTACAGTTAGAAAGTTCTACAGAAATTGAA
ACCTCTGATGAAAATGTTATGGCCACTGATATGGAGTGTGTTTGTGAAGGACTGAATGTT
CTGGAGAACACAGACAATAATTCAAAGGAAAAGACTGTTATATCTGAAGCTGCTAAAACT
GAAGATGTAATTCTTTGCAATAGTGATACAGATGAAGACTGTTTAATCATTGATACAGAA
TGTCAAAATAATGGTAATGGAAAGACAGCTGATATGGGTTCTAATATAAATTCTAAACCA
GCTAACCTAAATTCTTCCTCAGAACAGGCTTCTGTAGGAAACCAGACTAACACTGCATGT
AGTCCTGAAGAATCATGTGTTTTAAAAAAACCTATCAAACGAGTATATAAAAAATTTGAT
CCAGTTGGAGAAATTTTAAAAATGCAGGATGAACTCTTAAAGCCAATTTCCAGAAAAATA
CCTGAATTGCCCTTAATGAACTCAGAAAATTCTAAACAACCTTCTATTTCTGAGCAACCC
TCTGCTCCTTCAGATGCTTCTGGTTGGCCAAAATCTATATGGCCTTCTGCCTTTCAGAAG
CCAAAAGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGATAGTGACTTAAAAACATCTGATGCCTTACAGTTAGAAAGTTCTACAGAAATTGAA
ACCTCTGATGAAAATGTTATGGCCACTGATATGGAGTGTGTTTGTGAAGGACTGAATGTT
CTGGAGAACACAGACAATAATTCAAAGGAAAAGACTGTTATATCTGAAGCTGCTAAAACT
GAAGATGTAATTCTTTGCAATAGTGATACAGATGAAGACTGTTTAATCATTGATACAGAA
TGTCAAAATAATGGTAATGGAAAGACAGCTGATATGGGTTCTAATATAAATTCTAAACCA
GCTAACCTAAATTCTTCCTCAGAACAGGCTTCTGTAGGAAACCAGACTAACACTGCATGT
AGTCCTGAAGAATCATGTGTTTTAAAAAAACCTATCAAACGAGTATATAAAAAATTTGAT
CCAGTTGGAGAAATTTTAAAAATGCAGGATGAACTCTTAAAGCCAATTTCCAGAAAAATA
CCTGAATTGCCCTTAATGAACTCAGAAAATTCTAAACAACCTTCTATTTCTGAGCAACCC
TCTGCTCCTTCAGATGCTTCTGGTTGGCCAAAATCTATATGGCCTTCTGCCTTTCAGAAG
CCAAAAGGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               434-610, - strand, RNAz p=0.876993

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               434-610, - strand, RNAz p=0.876993

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-610, gnl|bosTau2|chr10 (36931197-36931803)
               

               
               1-610, gnl|Hg17|chr15 (58528948-58528339)
               

               
               1-610, gnl|Mm7|chr9 (69447496-69448039)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-610, gnl|bosTau2|chr10 (36931197-36931803)
               

               
               1-610, gnl|Hg17|chr15 (58528948-58528339)
               

               
               1-610, gnl|Mm7|chr9 (69447496-69448039)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-610, gnl\|bosTau2\|chr10 (36931197-36931803)
	1-610, gnl\|Hg17\|chr15 (58528948-58528339)
	1-610, gnl\|Mm7\|chr9 (69447496-69448039)