reep18c_a14.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCACGCCTCGCCACTACCTGGACTTCATCAATCACTACGCCAACCTGTTCCATGAGAAG CGGAGCGAGCTGGAGGAGCAGCAGATGCACCTGAACGTTGGGCTCAGGAAGATCAAAGAG ACGGTGGACCAGGTGGAGGAGCTGCGTCGGGACCTCAGGATCAAGAGCCAGGAGCTGGAG GTGAAGAACGCGGCGGCCAACGACAAGCTGAAAAAGATGGTGAAGGACCAGCAGGAGGCT GAGAAGAAAAAGGTCATGAGCCAGGAAATCCAGGAGCAGCTGCACAAGCAGCAGGAGGTC ATCGCAGACAAACAGATGAGCGTCAAGGAGGACCTGGACAAGGTGGAGCCGGCTGTCATC GAGGCCCAGAATGCCGTGAAGTCCATAAAGAAGCAGCACCTGGTGGAGGTGCGGTCCATG GCCAACCCTCCGGCCGCCGTGAAGCTGGCGCTCGAGTCCATCTGCCTGCTGCTGGGCGAG AGCACCACGGACTGGAAGCAGATCCGCTCCATCATCATGCGGGAGAACTTCATCCCCACC ATCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCACGCCTCGCCACTACCTGGACTTCATCAATCACTACGCCAACCTGTTCCATGAGAAG CGGAGCGAGCTGGAGGAGCAGCAGATGCACCTGAACGTTGGGCTCAGGAAGATCAAAGAG ACGGTGGACCAGGTGGAGGAGCTGCGTCGGGACCTCAGGATCAAGAGCCAGGAGCTGGAG GTGAAGAACGCGGCGGCCAACGACAAGCTGAAAAAGATGGTGAAGGACCAGCAGGAGGCT GAGAAGAAAAAGGTCATGAGCCAGGAAATCCAGGAGCAGCTGCACAAGCAGCAGGAGGTC ATCGCAGACAAACAGATGAGCGTCAAGGAGGACCTGGACAAGGTGGAGCCGGCTGTCATC GAGGCCCAGAATGCCGTGAAGTCCATAAAGAAGCAGCACCTGGTGGAGGTGCGGTCCATG GCCAACCCTCCGGCCGCCGTGAAGCTGGCGCTCGAGTCCATCTGCCTGCTGCTGGGCGAG AGCACCACGGACTGGAAGCAGATCCGCTCCATCATCATGCGGGAGAACTTCATCCCCACC ATCG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 16-135, - strand, RNAz p=0.527717 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 16-135, - strand, RNAz p=0.527717 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-135, gnl|bosTau2|chr21 (46518722-46518856) | |
| 1-135, gnl|canFam2|chr8 (73091865-73092049) | |
| 1-135, gnl|danRer3|chr8 (31216475-31216658) | |
| 1-135, gnl|dasNov1|scaffold_6554 (49484-49668) | |
| 1-135, gnl|echTel1|scaffold_300548 (17536-17720) | |
| 1-135, gnl|fr1|chrUn (64454120-64454304) | |
| 1-135, gnl|galGal2|chr5 (46268138-46268322) | |
| 1-135, gnl|hg17|chr14 (101565624-101565808) | |
| 1-135, gnl|Hg17|chr14 (101565671-101565805) | |
| 1-135, gnl|loxAfr1|scaffold_178169 (4081-4265) | |
| 1-135, gnl|mm7|chr12 (108169746-108169930) | |
| 1-135, gnl|Mm7|chr12 (108169793-108169928) | |
| 1-135, gnl|monDom2|scaffold_6 (85178315-85178499) | |
| 1-135, gnl|oryCun1|scaffold_129918 (8286-8102) | |
| 1-135, gnl|panTro1|chr15 (102170923-102171107) | |
| 1-135, gnl|rheMac2|chr7 (165319346-165319530) | |
| 1-135, gnl|rn3|chr6 (135381270-135381454) | |
| 1-135, gnl|tetNig1|chr10 (7364987-7365171) | |
| 1-135, gnl|xenTro1|scaffold_178 (1661061-1661242) | |
| 373-544, gnl|bosTau2|chr21 (46520665-46520836) | |
| 373-544, gnl|canFam2|chr8 (73093541-73093682) | |
| 373-544, gnl|danRer3|chr8 (31223344-31223484) | |
| 373-544, gnl|dasNov1|scaffold_6554 (50969-51109) | |
| 373-544, gnl|echTel1|scaffold_300548 (18931-19072) | |
| 373-544, gnl|fr1|chrUn (64455051-64455191) | |
| 373-544, gnl|galGal2|chr5 (46269374-46269515) | |
| 373-544, gnl|hg17|chr14 (101568358-101568499) | |
| 373-544, gnl|Hg17|chr14 (101568361-101568532) | |
| 373-544, gnl|loxAfr1|scaffold_54624 (8896-9037) | |
| 373-544, gnl|mm7|chr12 (108172406-108172547) | |
| 373-544, gnl|Mm7|chr12 (108172409-108172580) | |
| 373-544, gnl|monDom2|scaffold_6 (85180918-85181059) | |
| 373-544, gnl|oryCun1|scaffold_129802 (1398-1537) | |
| 373-544, gnl|panTro1|chr15 (102173809-102173950) | |
| 373-544, gnl|rheMac2|chr7 (165323789-165323930) | |
| 373-544, gnl|rn3|chr6 (135383851-135383992) | |
| 373-544, gnl|tetNig1|chr10 (7365814-7365954) | |
| 373-544, gnl|xenTro1|scaffold_178 (1664638-1664779) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-135, gnl|bosTau2|chr21 (46518722-46518856) | |
| 1-135, gnl|canFam2|chr8 (73091865-73092049) | |
| 1-135, gnl|danRer3|chr8 (31216475-31216658) | |
| 1-135, gnl|dasNov1|scaffold_6554 (49484-49668) | |
| 1-135, gnl|echTel1|scaffold_300548 (17536-17720) | |
| 1-135, gnl|fr1|chrUn (64454120-64454304) | |
| 1-135, gnl|galGal2|chr5 (46268138-46268322) | |
| 1-135, gnl|hg17|chr14 (101565624-101565808) | |
| 1-135, gnl|Hg17|chr14 (101565671-101565805) | |
| 1-135, gnl|loxAfr1|scaffold_178169 (4081-4265) | |
| 1-135, gnl|mm7|chr12 (108169746-108169930) | |
| 1-135, gnl|Mm7|chr12 (108169793-108169928) | |
| 1-135, gnl|monDom2|scaffold_6 (85178315-85178499) | |
| 1-135, gnl|oryCun1|scaffold_129918 (8286-8102) | |
| 1-135, gnl|panTro1|chr15 (102170923-102171107) | |
| 1-135, gnl|rheMac2|chr7 (165319346-165319530) | |
| 1-135, gnl|rn3|chr6 (135381270-135381454) | |
| 1-135, gnl|tetNig1|chr10 (7364987-7365171) | |
| 1-135, gnl|xenTro1|scaffold_178 (1661061-1661242) | |
| 373-544, gnl|bosTau2|chr21 (46520665-46520836) | |
| 373-544, gnl|canFam2|chr8 (73093541-73093682) | |
| 373-544, gnl|danRer3|chr8 (31223344-31223484) | |
| 373-544, gnl|dasNov1|scaffold_6554 (50969-51109) | |
| 373-544, gnl|echTel1|scaffold_300548 (18931-19072) | |
| 373-544, gnl|fr1|chrUn (64455051-64455191) | |
| 373-544, gnl|galGal2|chr5 (46269374-46269515) | |
| 373-544, gnl|hg17|chr14 (101568358-101568499) | |
| 373-544, gnl|Hg17|chr14 (101568361-101568532) | |
| 373-544, gnl|loxAfr1|scaffold_54624 (8896-9037) | |
| 373-544, gnl|mm7|chr12 (108172406-108172547) | |
| 373-544, gnl|Mm7|chr12 (108172409-108172580) | |
| 373-544, gnl|monDom2|scaffold_6 (85180918-85181059) | |
| 373-544, gnl|oryCun1|scaffold_129802 (1398-1537) | |
| 373-544, gnl|panTro1|chr15 (102173809-102173950) | |
| 373-544, gnl|rheMac2|chr7 (165323789-165323930) | |
| 373-544, gnl|rn3|chr6 (135383851-135383992) | |
| 373-544, gnl|tetNig1|chr10 (7365814-7365954) | |
| 373-544, gnl|xenTro1|scaffold_178 (1664638-1664779) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |