Non-Coding RNA Search

reep19c_a4.y1

Sequence:


               
               TCCAGCTCGGGCCTGAGCCGAGACGCCACGGCCACCCCGCCGTCCTCCCCCTCCATGAGC
AGCGCCCTCGCCATCGTATGGAGCCCCAACAGCCCGTATGGGGACGTGATTGGCCTCCAA
GTGGACTACTGGCTGGGCCACCCTGGGGAGCGGAGGAGGGAAGGTGACAAGAGGGACGCC
AGCTCCAAGAACACCCTCAAGAGCGTCTTCCGCTCGGTGCAGGTGTCCCGCCTGCCCCAT
GGTGGGGAGGCCCAGCTTTCCGGCACCATGGCCATGACCGTGGTCACCAAAGAGAAGAAC
AAGAAAGTGCCCACCATCTTCCTGAGCAAGAAACCTCGAGAAAAGGAGGTGGATTCTAAG
AGCCAGGTCATCGAAGGCATCAGCCGCCTCATCTGCTCTGCCAAGCAGCAGCAGACCATG
CTGAGAGTGTCCATCGACGGAGTCGAGTGGAGTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGCTCGGGCCTGAGCCGAGACGCCACGGCCACCCCGCCGTCCTCCCCCTCCATGAGC
AGCGCCCTCGCCATCGTATGGAGCCCCAACAGCCCGTATGGGGACGTGATTGGCCTCCAA
GTGGACTACTGGCTGGGCCACCCTGGGGAGCGGAGGAGGGAAGGTGACAAGAGGGACGCC
AGCTCCAAGAACACCCTCAAGAGCGTCTTCCGCTCGGTGCAGGTGTCCCGCCTGCCCCAT
GGTGGGGAGGCCCAGCTTTCCGGCACCATGGCCATGACCGTGGTCACCAAAGAGAAGAAC
AAGAAAGTGCCCACCATCTTCCTGAGCAAGAAACCTCGAGAAAAGGAGGTGGATTCTAAG
AGCCAGGTCATCGAAGGCATCAGCCGCCTCATCTGCTCTGCCAAGCAGCAGCAGACCATG
CTGAGAGTGTCCATCGACGGAGTCGAGTGGAGTGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28175142|gb|AAH43302.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28175142|gb|AAH43302.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-307, - strand, RNAz p=0.961097

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-307, - strand, RNAz p=0.961097

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               80-307, gnl|bosTau2|chr29 (39847465-39847692)
               

               
               80-307, gnl|canFam2|chr18 (54084187-54083916)
               

               
               80-307, gnl|danRer3|chr21 (21909375-21909121)
               

               
               80-307, gnl|dasNov1|scaffold_66111 (4241-3970)
               

               
               80-307, gnl|echTel1|scaffold_306230 (672-396)
               

               
               80-307, gnl|fr1|chrUn (129739178-129739426)
               

               
               80-307, gnl|galGal2|chr3 (4194148-4194418)
               

               
               80-307, gnl|hg17|chr11 (65765445-65765715)
               

               
               80-307, gnl|Hg17|chr11 (65765473-65765700)
               

               
               80-307, gnl|mm7|chr19 (5031756-5031497)
               

               
               80-307, gnl|Mm7|chr19 (5031726-5031499)
               

               
               80-307, gnl|panTro1|chr9 (67017027-67017297)
               

               
               80-307, gnl|rheMac2|chr14 (8203637-8203368)
               

               
               80-307, gnl|rn3|chr1 (207907562-207907301)
               

               
               80-307, gnl|tetNig1|chrUn_random (21870348-21870102)
               

               
               80-307, gnl|xenTro1|scaffold_1046 (140600-140331)
               


               
               109-305, gnl|bosTau2|chr21 (49442705-49442503)
               

               
               109-305, gnl|Hg17|chr14 (104930023-104930225)
               

               
               109-305, gnl|Mm7|chr12 (110595024-110595226)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               80-307, gnl|bosTau2|chr29 (39847465-39847692)
               

               
               80-307, gnl|canFam2|chr18 (54084187-54083916)
               

               
               80-307, gnl|danRer3|chr21 (21909375-21909121)
               

               
               80-307, gnl|dasNov1|scaffold_66111 (4241-3970)
               

               
               80-307, gnl|echTel1|scaffold_306230 (672-396)
               

               
               80-307, gnl|fr1|chrUn (129739178-129739426)
               

               
               80-307, gnl|galGal2|chr3 (4194148-4194418)
               

               
               80-307, gnl|hg17|chr11 (65765445-65765715)
               

               
               80-307, gnl|Hg17|chr11 (65765473-65765700)
               

               
               80-307, gnl|mm7|chr19 (5031756-5031497)
               

               
               80-307, gnl|Mm7|chr19 (5031726-5031499)
               

               
               80-307, gnl|panTro1|chr9 (67017027-67017297)
               

               
               80-307, gnl|rheMac2|chr14 (8203637-8203368)
               

               
               80-307, gnl|rn3|chr1 (207907562-207907301)
               

               
               80-307, gnl|tetNig1|chrUn_random (21870348-21870102)
               

               
               80-307, gnl|xenTro1|scaffold_1046 (140600-140331)
               


               
               109-305, gnl|bosTau2|chr21 (49442705-49442503)
               

               
               109-305, gnl|Hg17|chr14 (104930023-104930225)
               

               
               109-305, gnl|Mm7|chr12 (110595024-110595226)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	80-307, gnl\|bosTau2\|chr29 (39847465-39847692)
	80-307, gnl\|canFam2\|chr18 (54084187-54083916)
	80-307, gnl\|danRer3\|chr21 (21909375-21909121)
	80-307, gnl\|dasNov1\|scaffold_66111 (4241-3970)
	80-307, gnl\|echTel1\|scaffold_306230 (672-396)
	80-307, gnl\|fr1\|chrUn (129739178-129739426)
	80-307, gnl\|galGal2\|chr3 (4194148-4194418)
	80-307, gnl\|hg17\|chr11 (65765445-65765715)
	80-307, gnl\|Hg17\|chr11 (65765473-65765700)
	80-307, gnl\|mm7\|chr19 (5031756-5031497)
	80-307, gnl\|Mm7\|chr19 (5031726-5031499)
	80-307, gnl\|panTro1\|chr9 (67017027-67017297)
	80-307, gnl\|rheMac2\|chr14 (8203637-8203368)
	80-307, gnl\|rn3\|chr1 (207907562-207907301)
	80-307, gnl\|tetNig1\|chrUn_random (21870348-21870102)
	80-307, gnl\|xenTro1\|scaffold_1046 (140600-140331)

	109-305, gnl\|bosTau2\|chr21 (49442705-49442503)
	109-305, gnl\|Hg17\|chr14 (104930023-104930225)
	109-305, gnl\|Mm7\|chr12 (110595024-110595226)