Non-Coding RNA Search

reep19c_c18.y1

Sequence:


               
               CAAAAATGAGCAACTAGAATCTGAAATGCAGAACCTTAAAAAGTGTGTGAGTGAATTGGA
AGAAGAAAAGCAGCAGTTAGTCAAGGAGAAAACTAAGGTGGAATCAGAAATACGAAAGGA
ATATATGGAGAAAATACAAGGTGCTCAGAAAGGACCTGGCAATAAAAGCCATGCAAAGGA
ACTTCAGGAGCTGTTAAAAGAAAAACAACAAGAAGTAAAGCAGCTGCAGAAGGATTGCAT
CAGGTATCAAGAGAAAATTAGTGCTCTGGAGAGAACCGTTAAGGCGCTAGAATTTGTTCA
GGCTGAATCCCAAAAAGATTTAGAAATAACCAAGGAAAATCTGGCTCACGCCAAGGAAGA
TCGCAGGAAGGCAGAAACAGAATTAGCTAGCTTCAAAGTACTGCTAGATGACACTCAAAG
TGAAGCAGCAAGGGTCCTAGCAGATAATCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAATGAGCAACTAGAATCTGAAATGCAGAACCTTAAAAAGTGTGTGAGTGAATTGGA
AGAAGAAAAGCAGCAGTTAGTCAAGGAGAAAACTAAGGTGGAATCAGAAATACGAAAGGA
ATATATGGAGAAAATACAAGGTGCTCAGAAAGGACCTGGCAATAAAAGCCATGCAAAGGA
ACTTCAGGAGCTGTTAAAAGAAAAACAACAAGAAGTAAAGCAGCTGCAGAAGGATTGCAT
CAGGTATCAAGAGAAAATTAGTGCTCTGGAGAGAACCGTTAAGGCGCTAGAATTTGTTCA
GGCTGAATCCCAAAAAGATTTAGAAATAACCAAGGAAAATCTGGCTCACGCCAAGGAAGA
TCGCAGGAAGGCAGAAACAGAATTAGCTAGCTTCAAAGTACTGCTAGATGACACTCAAAG
TGAAGCAGCAAGGGTCCTAGCAGATAATCTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-279, - strand, RNAz p=0.509416

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, - strand, RNAz p=0.509416

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-452, gnl|bosTau2|chr1 (40631067-40630616)
               

               
               1-452, gnl|canFam2|chr33 (28005806-28006460)
               

               
               1-452, gnl|danRer3|chr4 (28630591-28629958)
               

               
               1-452, gnl|dasNov1|scaffold_1050 (91440-92094)
               

               
               1-452, gnl|echTel1|scaffold_165931 (10103-9451)
               

               
               1-452, gnl|fr1|chrUn (221482818-221482185)
               

               
               1-452, gnl|galGal2|chr5 (15621711-15621057)
               

               
               1-452, gnl|hg17|chr3 (122895365-122896019)
               

               
               1-452, gnl|Hg17|chr3 (122896198-122895747)
               

               
               1-452, gnl|loxAfr1|scaffold_1562 (138030-137375)
               

               
               1-452, gnl|mm7|chr16 (36625294-36624640)
               

               
               1-452, gnl|Mm7|chr16 (36624459-36624910)
               

               
               1-452, gnl|monDom2|scaffold_24 (18988938-18988284)
               

               
               1-452, gnl|panTro1|chr2 (124585905-124586560)
               

               
               1-452, gnl|rheMac2|chr2 (41683480-41684134)
               

               
               1-452, gnl|rn3|chr11 (65720007-65720661)
               

               
               1-452, gnl|tetNig1|chr19 (1241730-1242363)
               

               
               1-452, gnl|xenTro1|scaffold_62 (2695422-2694768)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-452, gnl|bosTau2|chr1 (40631067-40630616)
               

               
               1-452, gnl|canFam2|chr33 (28005806-28006460)
               

               
               1-452, gnl|danRer3|chr4 (28630591-28629958)
               

               
               1-452, gnl|dasNov1|scaffold_1050 (91440-92094)
               

               
               1-452, gnl|echTel1|scaffold_165931 (10103-9451)
               

               
               1-452, gnl|fr1|chrUn (221482818-221482185)
               

               
               1-452, gnl|galGal2|chr5 (15621711-15621057)
               

               
               1-452, gnl|hg17|chr3 (122895365-122896019)
               

               
               1-452, gnl|Hg17|chr3 (122896198-122895747)
               

               
               1-452, gnl|loxAfr1|scaffold_1562 (138030-137375)
               

               
               1-452, gnl|mm7|chr16 (36625294-36624640)
               

               
               1-452, gnl|Mm7|chr16 (36624459-36624910)
               

               
               1-452, gnl|monDom2|scaffold_24 (18988938-18988284)
               

               
               1-452, gnl|panTro1|chr2 (124585905-124586560)
               

               
               1-452, gnl|rheMac2|chr2 (41683480-41684134)
               

               
               1-452, gnl|rn3|chr11 (65720007-65720661)
               

               
               1-452, gnl|tetNig1|chr19 (1241730-1242363)
               

               
               1-452, gnl|xenTro1|scaffold_62 (2695422-2694768)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-452, gnl\|bosTau2\|chr1 (40631067-40630616)
	1-452, gnl\|canFam2\|chr33 (28005806-28006460)
	1-452, gnl\|danRer3\|chr4 (28630591-28629958)
	1-452, gnl\|dasNov1\|scaffold_1050 (91440-92094)
	1-452, gnl\|echTel1\|scaffold_165931 (10103-9451)
	1-452, gnl\|fr1\|chrUn (221482818-221482185)
	1-452, gnl\|galGal2\|chr5 (15621711-15621057)
	1-452, gnl\|hg17\|chr3 (122895365-122896019)
	1-452, gnl\|Hg17\|chr3 (122896198-122895747)
	1-452, gnl\|loxAfr1\|scaffold_1562 (138030-137375)
	1-452, gnl\|mm7\|chr16 (36625294-36624640)
	1-452, gnl\|Mm7\|chr16 (36624459-36624910)
	1-452, gnl\|monDom2\|scaffold_24 (18988938-18988284)
	1-452, gnl\|panTro1\|chr2 (124585905-124586560)
	1-452, gnl\|rheMac2\|chr2 (41683480-41684134)
	1-452, gnl\|rn3\|chr11 (65720007-65720661)
	1-452, gnl\|tetNig1\|chr19 (1241730-1242363)
	1-452, gnl\|xenTro1\|scaffold_62 (2695422-2694768)