Non-Coding RNA Search

reep19c_o2.y1

Sequence:


               
               TGCTAGTCCTCTCAGCCTTCTTGACCGGACTTAATAATGACCGCAGTTTCTCAGTTGCCT
AGAAGTCGATTTAAAAAAACATTAAACACATGCACATCCCATTACTATTACCTAACTAGC
GCCCATCCTCTATTTCTCTGTTTTCTTAGGATGTCTGCTTTTAATTTCGGATTATAACTC
CTGATAGTGTTGCTGGGAGCCTTTAATATGCTTGATTGGAAGGCTGGGGTATTGCTATCA
CCATTATACCTCTTCTTTAAAACTACTCAGAAATAAGACCTGCTCGTTGGGCGGGATTCT
GTGGACAGAAGGTCGATGTTGCCCCCATCCCTGGGCGTTTAATAATCGTATTGTCAAGCA
CTCTCCCACCATGGGCGTCCCGAAGTCCCAAGGACAAAAGCACAGTCGGAGCAGAGAGCC
CGCTTAACGGGCACCTCCGTGCCTCTGGTATGTGGCATTGTTGCTTTTGCCACCTCCTTA
GCCAGCCGACGTGGAGCAAAGCCAAAAGGTAGCTCTCTGCAGTGGAGGGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTAGTCCTCTCAGCCTTCTTGACCGGACTTAATAATGACCGCAGTTTCTCAGTTGCCT
AGAAGTCGATTTAAAAAAACATTAAACACATGCACATCCCATTACTATTACCTAACTAGC
GCCCATCCTCTATTTCTCTGTTTTCTTAGGATGTCTGCTTTTAATTTCGGATTATAACTC
CTGATAGTGTTGCTGGGAGCCTTTAATATGCTTGATTGGAAGGCTGGGGTATTGCTATCA
CCATTATACCTCTTCTTTAAAACTACTCAGAAATAAGACCTGCTCGTTGGGCGGGATTCT
GTGGACAGAAGGTCGATGTTGCCCCCATCCCTGGGCGTTTAATAATCGTATTGTCAAGCA
CTCTCCCACCATGGGCGTCCCGAAGTCCCAAGGACAAAAGCACAGTCGGAGCAGAGAGCC
CGCTTAACGGGCACCTCCGTGCCTCTGGTATGTGGCATTGTTGCTTTTGCCACCTCCTTA
GCCAGCCGACGTGGAGCAAAGCCAAAAGGTAGCTCTCTGCAGTGGAGGGCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               93-190, + strand, RNAz p=0.991207

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-190, + strand, RNAz p=0.991207

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-528, gnl|bosTau2|chr18 (51223992-51223485)
               

               
               16-528, gnl|Hg17|chrX (16927772-16928307)
               

               
               16-528, gnl|Mm7|chrX (157189538-157188986)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-528, gnl|bosTau2|chr18 (51223992-51223485)
               

               
               16-528, gnl|Hg17|chrX (16927772-16928307)
               

               
               16-528, gnl|Mm7|chrX (157189538-157188986)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	16-528, gnl\|bosTau2\|chr18 (51223992-51223485)
	16-528, gnl\|Hg17\|chrX (16927772-16928307)
	16-528, gnl\|Mm7\|chrX (157189538-157188986)