Non-Coding RNA Search

reep19c_p6.y1

Sequence:


               
               CGCCGGGCCGCGCCGCCCGGGCTGCAGGCGGGTCCCAGGGAGCTGGGTCCCCGGACGGCG
GGCGGTGCGGCGCGCGCTGGCGGCCCCGGAGGAGGCCTGGAGATGTCCTGTGTGCGCCGC
CTCCTGCTCACATCCCTGTTCCCGGCCCTCCTACTTCACGGGCTGGGAGAGGGTTCTGCC
CTCCTTCATCCAGATAGCAGATCCCACCCCCGGTCCCTGGAGAAAAGTGCCTGGAGGGCT
TTCAAGGAATCCCAGTGTCATCACATGCTGAAACATCTTCACAATGGAGCAAGGATCACT
GTGCAGATGCCGCCGGCCATCGAGGGCCACTGGGTATCTACCGGCTGCGAGGTGCGGTCC
GGCCCCGAGTTCATCACCAGGTCCTACCGGTTCTACCCCAACAACACCTTCAAGGCCTTC
CAGTTCTACTACGGCGGCAACCGCTGCACCAGCCCCACCTATACGCTGGTGGTCCGCGGC
AAGATCCGCTTGCGCCAGGCCTCCTGGATCATCCGCGGCGGCACCGAGGCGGACTACCAG
CTGCACCGCGTGCAGGTCGTCTGCCACTCGGAGCCCGTGGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCGGGCCGCGCCGCCCGGGCTGCAGGCGGGTCCCAGGGAGCTGGGTCCCCGGACGGCG
GGCGGTGCGGCGCGCGCTGGCGGCCCCGGAGGAGGCCTGGAGATGTCCTGTGTGCGCCGC
CTCCTGCTCACATCCCTGTTCCCGGCCCTCCTACTTCACGGGCTGGGAGAGGGTTCTGCC
CTCCTTCATCCAGATAGCAGATCCCACCCCCGGTCCCTGGAGAAAAGTGCCTGGAGGGCT
TTCAAGGAATCCCAGTGTCATCACATGCTGAAACATCTTCACAATGGAGCAAGGATCACT
GTGCAGATGCCGCCGGCCATCGAGGGCCACTGGGTATCTACCGGCTGCGAGGTGCGGTCC
GGCCCCGAGTTCATCACCAGGTCCTACCGGTTCTACCCCAACAACACCTTCAAGGCCTTC
CAGTTCTACTACGGCGGCAACCGCTGCACCAGCCCCACCTATACGCTGGTGGTCCGCGGC
AAGATCCGCTTGCGCCAGGCCTCCTGGATCATCCGCGGCGGCACCGAGGCGGACTACCAG
CTGCACCGCGTGCAGGTCGTCTGCCACTCGGAGCCCGTGGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26339480|dbj|BAC33411.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26339480|dbj|BAC33411.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               450-567, - strand, RNAz p=0.888074

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               450-567, - strand, RNAz p=0.888074

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               344-567, gnl|bosTau2|chr13 (39218767-39218990)
               

               
               344-567, gnl|canFam2|chr24 (46234477-46234705)
               

               
               344-567, gnl|danRer3|chr6 (31533489-31533283)
               

               
               344-567, gnl|dasNov1|scaffold_90998 (5074-4846)
               

               
               344-567, gnl|echTel1|scaffold_165055 (3097-3324)
               

               
               344-567, gnl|fr1|chrUn (115244426-115244216)
               

               
               344-567, gnl|galGal2|chr20 (10687052-10686827)
               

               
               344-567, gnl|hg17|chr20 (56475822-56476050)
               

               
               344-567, gnl|Hg17|chr20 (56476121-56475898)
               

               
               344-567, gnl|loxAfr1|scaffold_158387 (883-655)
               

               
               344-567, gnl|mm7|chr2 (173494629-173494400)
               

               
               344-567, gnl|Mm7|chr2 (173494336-173494551)
               

               
               344-567, gnl|monDom2|scaffold_1 (172849011-172849236)
               

               
               344-567, gnl|oryCun1|scaffold_149447 (12033-11807)
               

               
               344-567, gnl|panTro1|chr21 (59463305-59463533)
               

               
               344-567, gnl|rheMac2|chr18 (3990822-3991046)
               

               
               344-567, gnl|rn3|chr3 (164597386-164597614)
               

               
               344-567, gnl|tetNig1|chr11 (7398053-7398263)
               

               
               344-567, gnl|xenTro1|scaffold_1348 (63260-63047)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               344-567, gnl|bosTau2|chr13 (39218767-39218990)
               

               
               344-567, gnl|canFam2|chr24 (46234477-46234705)
               

               
               344-567, gnl|danRer3|chr6 (31533489-31533283)
               

               
               344-567, gnl|dasNov1|scaffold_90998 (5074-4846)
               

               
               344-567, gnl|echTel1|scaffold_165055 (3097-3324)
               

               
               344-567, gnl|fr1|chrUn (115244426-115244216)
               

               
               344-567, gnl|galGal2|chr20 (10687052-10686827)
               

               
               344-567, gnl|hg17|chr20 (56475822-56476050)
               

               
               344-567, gnl|Hg17|chr20 (56476121-56475898)
               

               
               344-567, gnl|loxAfr1|scaffold_158387 (883-655)
               

               
               344-567, gnl|mm7|chr2 (173494629-173494400)
               

               
               344-567, gnl|Mm7|chr2 (173494336-173494551)
               

               
               344-567, gnl|monDom2|scaffold_1 (172849011-172849236)
               

               
               344-567, gnl|oryCun1|scaffold_149447 (12033-11807)
               

               
               344-567, gnl|panTro1|chr21 (59463305-59463533)
               

               
               344-567, gnl|rheMac2|chr18 (3990822-3991046)
               

               
               344-567, gnl|rn3|chr3 (164597386-164597614)
               

               
               344-567, gnl|tetNig1|chr11 (7398053-7398263)
               

               
               344-567, gnl|xenTro1|scaffold_1348 (63260-63047)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	344-567, gnl\|bosTau2\|chr13 (39218767-39218990)
	344-567, gnl\|canFam2\|chr24 (46234477-46234705)
	344-567, gnl\|danRer3\|chr6 (31533489-31533283)
	344-567, gnl\|dasNov1\|scaffold_90998 (5074-4846)
	344-567, gnl\|echTel1\|scaffold_165055 (3097-3324)
	344-567, gnl\|fr1\|chrUn (115244426-115244216)
	344-567, gnl\|galGal2\|chr20 (10687052-10686827)
	344-567, gnl\|hg17\|chr20 (56475822-56476050)
	344-567, gnl\|Hg17\|chr20 (56476121-56475898)
	344-567, gnl\|loxAfr1\|scaffold_158387 (883-655)
	344-567, gnl\|mm7\|chr2 (173494629-173494400)
	344-567, gnl\|Mm7\|chr2 (173494336-173494551)
	344-567, gnl\|monDom2\|scaffold_1 (172849011-172849236)
	344-567, gnl\|oryCun1\|scaffold_149447 (12033-11807)
	344-567, gnl\|panTro1\|chr21 (59463305-59463533)
	344-567, gnl\|rheMac2\|chr18 (3990822-3991046)
	344-567, gnl\|rn3\|chr3 (164597386-164597614)
	344-567, gnl\|tetNig1\|chr11 (7398053-7398263)
	344-567, gnl\|xenTro1\|scaffold_1348 (63260-63047)