reep21c_f1.y1
|
GAGGGGTGGACGGAGGCTTTGCCATCAACTCTCCCTTCCCACTGAGCCTGCAGCCGCAGA
GAGCCGTGGACCTCATTCTGTCCTTTGACTACTCCCTGGACGCCCCTTTTGAGGTCTTAC
AGAAGACAGAGCAGTACTGCCTGGACCGAGGCATCCCCTTCCCCAAGATTGAGGTGCGGC
CTGAGGACTTGAAGGAACCCCAGGAGTGCTACCTGTTTGCCAAGGCAGGGGACCCATGCT
CACCCATCGTGCTGCATTTCCCCCTGGTCAACCGTACCTTCCGCACATACCTGGCCCCAG
GTGTGGAGCGACAAACTGCGGAGGAGAAAGCCTGTGGCGACTTTGTCATCAGCGGGCCTG
ACACCCCCTACAGCATGATGAACTTCACCTATGAGCCCCAGGAGTTTGAGCGGCTGGTGG
CCCTGAGTCGATACAACGTTCTGAACAATGTGGAGACCTTGAAGCAGGCCCTCCGACTGG
CTCTGGACAGGCGACAGGCTGCGGACAGGGCTAGAGGCTGACTCAGGCTGCAGCTGTGAC
AGAGAGGAAGGACTGTGGGCTCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGGGGTGGACGGAGGCTTTGCCATCAACTCTCCCTTCCCACTGAGCCTGCAGCCGCAGA
GAGCCGTGGACCTCATTCTGTCCTTTGACTACTCCCTGGACGCCCCTTTTGAGGTCTTAC
AGAAGACAGAGCAGTACTGCCTGGACCGAGGCATCCCCTTCCCCAAGATTGAGGTGCGGC
CTGAGGACTTGAAGGAACCCCAGGAGTGCTACCTGTTTGCCAAGGCAGGGGACCCATGCT
CACCCATCGTGCTGCATTTCCCCCTGGTCAACCGTACCTTCCGCACATACCTGGCCCCAG
GTGTGGAGCGACAAACTGCGGAGGAGAAAGCCTGTGGCGACTTTGTCATCAGCGGGCCTG
ACACCCCCTACAGCATGATGAACTTCACCTATGAGCCCCAGGAGTTTGAGCGGCTGGTGG
CCCTGAGTCGATACAACGTTCTGAACAATGTGGAGACCTTGAAGCAGGCCCTCCGACTGG
CTCTGGACAGGCGACAGGCTGCGGACAGGGCTAGAGGCTGACTCAGGCTGCAGCTGTGAC
AGAGAGGAAGGACTGTGGGCTCC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
104-306, gnl|bosTau2|chr10 (17004081-17003879) |
|
104-306, gnl|canFam2|chr30 (12144186-12144414) |
|
104-306, gnl|danRer3|chr17 (17698620-17698427) |
|
104-306, gnl|dasNov1|scaffold_67323 (4035-3863) |
|
104-306, gnl|echTel1|scaffold_294108 (3436-3232) |
|
104-306, gnl|galGal2|chr5 (22810879-22811074) |
|
104-306, gnl|hg17|chr15 (40221996-40222221) |
|
104-306, gnl|Hg17|chr15 (40222214-40222012) |
|
104-306, gnl|loxAfr1|scaffold_3008 (87833-87607) |
|
104-306, gnl|mm7|chr2 (120041726-120041951) |
|
104-306, gnl|Mm7|chr2 (120041942-120041740) |
|
104-306, gnl|oryCun1|scaffold_159839 (41929-41700) |
|
104-306, gnl|panTro1|chr16 (40196709-40196934) |
|
104-306, gnl|rheMac2|chr7 (20554276-20554501) |
|
104-306, gnl|rn3|chr3 (106684143-106684368) |
|
104-306, gnl|xenTro1|scaffold_271 (340711-340923) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
104-306, gnl|bosTau2|chr10 (17004081-17003879) |
|
104-306, gnl|canFam2|chr30 (12144186-12144414) |
|
104-306, gnl|danRer3|chr17 (17698620-17698427) |
|
104-306, gnl|dasNov1|scaffold_67323 (4035-3863) |
|
104-306, gnl|echTel1|scaffold_294108 (3436-3232) |
|
104-306, gnl|galGal2|chr5 (22810879-22811074) |
|
104-306, gnl|hg17|chr15 (40221996-40222221) |
|
104-306, gnl|Hg17|chr15 (40222214-40222012) |
|
104-306, gnl|loxAfr1|scaffold_3008 (87833-87607) |
|
104-306, gnl|mm7|chr2 (120041726-120041951) |
|
104-306, gnl|Mm7|chr2 (120041942-120041740) |
|
104-306, gnl|oryCun1|scaffold_159839 (41929-41700) |
|
104-306, gnl|panTro1|chr16 (40196709-40196934) |
|
104-306, gnl|rheMac2|chr7 (20554276-20554501) |
|
104-306, gnl|rn3|chr3 (106684143-106684368) |
|
104-306, gnl|xenTro1|scaffold_271 (340711-340923) |
