Non-Coding RNA Search

reep21c_p9.y1

Sequence:


               
               AAACCTGAAGATAAAAGTATATTGAATTAATAAAATAATTTCTTGTATTATAAGATTTGG
TTTGTATTTGTTACTGATTAATTATAGTGCCCCCCCCATTTGTTTTTCAGTGGGTGCTAT
TTTACCTAGTTTCTTTTGAAAAACATGGTTTGGGCCAGATATCTTAACAGAAACCAGAAT
TACCAGTATTATTTTAAAATTCTTTGTTGGTTTAGCAGGTTATAATTTAATGGCATAAGC
CCAGATAAATGTATTAAGTACTGCATGGTAATACAGCCAGATTATTTTTAAGTGTTCACC
TTAAAAAAGTCTCTTAAATAAAACTTTAAAAATAGAAATAAATAAACAGATACTCAGTTG
GTAGGCCTCTCAGGGTATTTCTGTATATCAAATTAATAGGAATTTTATTATTGTTATAAA
GATTACTATACAGGCTGATATTTGATAGCTGTATTTATTGTGTTGGCTGCAGTTATCAAA
TATTTATAGAGCAACCATCCATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACCTGAAGATAAAAGTATATTGAATTAATAAAATAATTTCTTGTATTATAAGATTTGG
TTTGTATTTGTTACTGATTAATTATAGTGCCCCCCCCATTTGTTTTTCAGTGGGTGCTAT
TTTACCTAGTTTCTTTTGAAAAACATGGTTTGGGCCAGATATCTTAACAGAAACCAGAAT
TACCAGTATTATTTTAAAATTCTTTGTTGGTTTAGCAGGTTATAATTTAATGGCATAAGC
CCAGATAAATGTATTAAGTACTGCATGGTAATACAGCCAGATTATTTTTAAGTGTTCACC
TTAAAAAAGTCTCTTAAATAAAACTTTAAAAATAGAAATAAATAAACAGATACTCAGTTG
GTAGGCCTCTCAGGGTATTTCTGTATATCAAATTAATAGGAATTTTATTATTGTTATAAA
GATTACTATACAGGCTGATATTTGATAGCTGTATTTATTGTGTTGGCTGCAGTTATCAAA
TATTTATAGAGCAACCATCCATATG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               54-168, - strand, RNAz p=0.910037
               

               
               375-482, + strand, RNAz p=0.87959

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-168, - strand, RNAz p=0.910037
               

               
               375-482, + strand, RNAz p=0.87959

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               15-482, gnl|bosTau2|chr4 (59653581-59653108)
               

               
               15-482, gnl|canFam2|chr16 (12356543-12355880)
               

               
               15-482, gnl|hg17|chr7 (138514803-138515442)
               

               
               15-482, gnl|Hg17|chr7 (138515029-138515468)
               

               
               15-482, gnl|loxAfr1|scaffold_82462 (690-4)
               

               
               15-482, gnl|mm7|chr6 (38498244-38498903)
               

               
               15-482, gnl|Mm7|chr6 (38498487-38498929)
               

               
               15-482, gnl|monDom2|scaffold_22 (2931809-2931180)
               

               
               15-482, gnl|oryCun1|scaffold_78442 (2497-1836)
               

               
               15-482, gnl|panTro1|chr6 (141266355-141266997)
               

               
               15-482, gnl|rheMac2|chr3 (176868088-176868740)
               

               
               15-482, gnl|rn3|chr4 (66412889-66413592)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-482, gnl|bosTau2|chr4 (59653581-59653108)
               

               
               15-482, gnl|canFam2|chr16 (12356543-12355880)
               

               
               15-482, gnl|hg17|chr7 (138514803-138515442)
               

               
               15-482, gnl|Hg17|chr7 (138515029-138515468)
               

               
               15-482, gnl|loxAfr1|scaffold_82462 (690-4)
               

               
               15-482, gnl|mm7|chr6 (38498244-38498903)
               

               
               15-482, gnl|Mm7|chr6 (38498487-38498929)
               

               
               15-482, gnl|monDom2|scaffold_22 (2931809-2931180)
               

               
               15-482, gnl|oryCun1|scaffold_78442 (2497-1836)
               

               
               15-482, gnl|panTro1|chr6 (141266355-141266997)
               

               
               15-482, gnl|rheMac2|chr3 (176868088-176868740)
               

               
               15-482, gnl|rn3|chr4 (66412889-66413592)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	54-168, - strand, RNAz p=0.910037
	375-482, + strand, RNAz p=0.87959

	15-482, gnl\|bosTau2\|chr4 (59653581-59653108)
	15-482, gnl\|canFam2\|chr16 (12356543-12355880)
	15-482, gnl\|hg17\|chr7 (138514803-138515442)
	15-482, gnl\|Hg17\|chr7 (138515029-138515468)
	15-482, gnl\|loxAfr1\|scaffold_82462 (690-4)
	15-482, gnl\|mm7\|chr6 (38498244-38498903)
	15-482, gnl\|Mm7\|chr6 (38498487-38498929)
	15-482, gnl\|monDom2\|scaffold_22 (2931809-2931180)
	15-482, gnl\|oryCun1\|scaffold_78442 (2497-1836)
	15-482, gnl\|panTro1\|chr6 (141266355-141266997)
	15-482, gnl\|rheMac2\|chr3 (176868088-176868740)
	15-482, gnl\|rn3\|chr4 (66412889-66413592)