Non-Coding RNA Search

reep23c_a23.y1

Sequence:


               
               GGTGCAAGCTTAGCTCTGATGTGGGTGCAGCTCAGCTCTGTGTCCTCTTTGCTCCCTGGC
CTGAGGCTGACCCTGGCAGGAACTCTCCTTCCCCGACCCTCCGCCCTCCCACACCCGCCC
CCTAGAGCCACGGTGGGGGCAGGGAGCATTGCTGTGGCTGGTGTCTGTCGCAGCCCTTCC
TGGAGTGCTGCTTCTAGACCCAGCTCAGGCTTTGCCCCGTGTAGGGAGAATGGAGGGCAA
CCTCAGTGTCCCTGTGTCCTGGGCTCCTTCTCCCCATTCTGTGTTCTTTGGGGGTTCCTG
TTCCCCCAAACTGAACACTCCCCTGTCCGACAGCCCGATGGCTTGACTATTGTCTGGCAT
TGCCCCCCCCCCCCTGCCCTCTGATGCTGGAATCAAAGATTGCCTCCCAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGCAAGCTTAGCTCTGATGTGGGTGCAGCTCAGCTCTGTGTCCTCTTTGCTCCCTGGC
CTGAGGCTGACCCTGGCAGGAACTCTCCTTCCCCGACCCTCCGCCCTCCCACACCCGCCC
CCTAGAGCCACGGTGGGGGCAGGGAGCATTGCTGTGGCTGGTGTCTGTCGCAGCCCTTCC
TGGAGTGCTGCTTCTAGACCCAGCTCAGGCTTTGCCCCGTGTAGGGAGAATGGAGGGCAA
CCTCAGTGTCCCTGTGTCCTGGGCTCCTTCTCCCCATTCTGTGTTCTTTGGGGGTTCCTG
TTCCCCCAAACTGAACACTCCCCTGTCCGACAGCCCGATGGCTTGACTATTGTCTGGCAT
TGCCCCCCCCCCCCTGCCCTCTGATGCTGGAATCAAAGATTGCCTCCCAAGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               90-186, - strand, RNAz p=0.722157
               

               
               224-368, - strand, RNAz p=0.987409

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-186, - strand, RNAz p=0.722157
               

               
               224-368, - strand, RNAz p=0.987409

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               3-412, gnl|bosTau2|chr15 (47056066-47056444)
               

               
               3-412, gnl|canFam2|chr18 (47166024-47164849)
               

               
               3-412, gnl|dasNov1|scaffold_162186 (565-1756)
               

               
               3-412, gnl|hg17|chr11 (45191473-45192718)
               

               
               3-412, gnl|Hg17|chr11 (45192408-45192820)
               

               
               3-412, gnl|loxAfr1|scaffold_13947 (21345-22499)
               

               
               3-412, gnl|mm7|chr2 (92836655-92835573)
               

               
               3-412, gnl|Mm7|chr2 (92835844-92835474)
               

               
               3-412, gnl|monDom2|scaffold_33 (10996273-10997565)
               

               
               3-412, gnl|panTro1|chr9 (45697370-45698613)
               

               
               3-412, gnl|rheMac2|chr14 (26903332-26902109)
               

               
               3-412, gnl|rn3|chr3 (77283225-77282104)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-412, gnl|bosTau2|chr15 (47056066-47056444)
               

               
               3-412, gnl|canFam2|chr18 (47166024-47164849)
               

               
               3-412, gnl|dasNov1|scaffold_162186 (565-1756)
               

               
               3-412, gnl|hg17|chr11 (45191473-45192718)
               

               
               3-412, gnl|Hg17|chr11 (45192408-45192820)
               

               
               3-412, gnl|loxAfr1|scaffold_13947 (21345-22499)
               

               
               3-412, gnl|mm7|chr2 (92836655-92835573)
               

               
               3-412, gnl|Mm7|chr2 (92835844-92835474)
               

               
               3-412, gnl|monDom2|scaffold_33 (10996273-10997565)
               

               
               3-412, gnl|panTro1|chr9 (45697370-45698613)
               

               
               3-412, gnl|rheMac2|chr14 (26903332-26902109)
               

               
               3-412, gnl|rn3|chr3 (77283225-77282104)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	90-186, - strand, RNAz p=0.722157
	224-368, - strand, RNAz p=0.987409

	3-412, gnl\|bosTau2\|chr15 (47056066-47056444)
	3-412, gnl\|canFam2\|chr18 (47166024-47164849)
	3-412, gnl\|dasNov1\|scaffold_162186 (565-1756)
	3-412, gnl\|hg17\|chr11 (45191473-45192718)
	3-412, gnl\|Hg17\|chr11 (45192408-45192820)
	3-412, gnl\|loxAfr1\|scaffold_13947 (21345-22499)
	3-412, gnl\|mm7\|chr2 (92836655-92835573)
	3-412, gnl\|Mm7\|chr2 (92835844-92835474)
	3-412, gnl\|monDom2\|scaffold_33 (10996273-10997565)
	3-412, gnl\|panTro1\|chr9 (45697370-45698613)
	3-412, gnl\|rheMac2\|chr14 (26903332-26902109)
	3-412, gnl\|rn3\|chr3 (77283225-77282104)