reep23c_f19.y1
|
CACAACATAACTACTCGGCGTTGCttcccaggctaggggttgaatcggagctgtagccac
cggcctacgccagagccacagcaacgcgggatccaagccgcgtctgcaacctacaccaca
gctcacagcaacgccggatcgttaacccactgagcaagggcagggatcgaacccgcaacc
tcatggttcctagtcggattcgttaaccactgcgccacgacgggaactccTCTACCCATC
TTTAATGAACATAATACCGGCCATCTCTCCCAGTTCTAACACTCAGCCTCTCCCCTCCGC
TTGGTTATCACAGCACCCACTGTCTCTCTCACCCAGGCACATACCACAGTGCTTGCTGCC
TTCTGCACCTACTCTGCCAAGACTGAAGAAGAGAGGCTGAAAGTCCCTCCAGGAAGGCTT
TCAGAGAACCTACTATTGCCACCATTACTAGTGTGGATAATAATGATAACAATTTTTGAA
GGTGGACTACAGAAGGGGTTCAGGCGAAATGAAGTTGGCCCCAGATCAGCTTCCAATTCC
AGCTGTTTCTGTCCCTTTGTTTCCTCTGATTCCAACCAATAGCAGCAGGTGGCTCTGCTG
GACTGACTTCTGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CACAACATAACTACTCGGCGTTGCttcccaggctaggggttgaatcggagctgtagccac
cggcctacgccagagccacagcaacgcgggatccaagccgcgtctgcaacctacaccaca
gctcacagcaacgccggatcgttaacccactgagcaagggcagggatcgaacccgcaacc
tcatggttcctagtcggattcgttaaccactgcgccacgacgggaactccTCTACCCATC
TTTAATGAACATAATACCGGCCATCTCTCCCAGTTCTAACACTCAGCCTCTCCCCTCCGC
TTGGTTATCACAGCACCCACTGTCTCTCTCACCCAGGCACATACCACAGTGCTTGCTGCC
TTCTGCACCTACTCTGCCAAGACTGAAGAAGAGAGGCTGAAAGTCCCTCCAGGAAGGCTT
TCAGAGAACCTACTATTGCCACCATTACTAGTGTGGATAATAATGATAACAATTTTTGAA
GGTGGACTACAGAAGGGGTTCAGGCGAAATGAAGTTGGCCCCAGATCAGCTTCCAATTCC
AGCTGTTTCTGTCCCTTTGTTTCCTCTGATTCCAACCAATAGCAGCAGGTGGCTCTGCTG
GACTGACTTCTGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
419-509, - strand, RNAmicro p=0.993316 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
419-509, - strand, RNAmicro p=0.993316 |
|
231-612, gnl|bosTau2|chrX (23552076-23552455) |
|
231-612, gnl|canFam2|chrX (59125007-59126346) |
|
231-612, gnl|dasNov1|scaffold_49032 (2671-4068) |
|
231-612, gnl|echTel1|scaffold_303820 (54544-55788) |
|
231-612, gnl|hg17|chrX (71149066-71150492) |
|
231-612, gnl|Hg17|chrX (71149130-71149515) |
|
231-612, gnl|loxAfr1|scaffold_6532 (58147-56852) |
|
231-612, gnl|mm7|chrX (97412783-97413992) |
|
231-612, gnl|oryCun1|scaffold_203442 (74562-73248) |
|
231-612, gnl|panTro1|chrX (73415858-73417266) |
|
231-612, gnl|rheMac2|chrX (71063536-71064938) |
|
231-612, gnl|rn3|chrX (90226661-90227876) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
231-612, gnl|bosTau2|chrX (23552076-23552455) |
|
231-612, gnl|canFam2|chrX (59125007-59126346) |
|
231-612, gnl|dasNov1|scaffold_49032 (2671-4068) |
|
231-612, gnl|echTel1|scaffold_303820 (54544-55788) |
|
231-612, gnl|hg17|chrX (71149066-71150492) |
|
231-612, gnl|Hg17|chrX (71149130-71149515) |
|
231-612, gnl|loxAfr1|scaffold_6532 (58147-56852) |
|
231-612, gnl|mm7|chrX (97412783-97413992) |
|
231-612, gnl|oryCun1|scaffold_203442 (74562-73248) |
|
231-612, gnl|panTro1|chrX (73415858-73417266) |
|
231-612, gnl|rheMac2|chrX (71063536-71064938) |
|
231-612, gnl|rn3|chrX (90226661-90227876) |
