Non-Coding RNA Search

reep23c_f7.y1

Sequence:


               
               CCCAGAGCCCTACCACTTCCACCCAGAACTCTGGTGCTCTGGCCGCTCCGTGCCCTTGGA
TCGCCAGGGCTATGGCCAGATCAAGGTGGTCCGGGCAGACGAGGACACACTGGGCTGTAT
CTGCGGCAAGACCAAGCTGGGGGAAGACATGCTGTGTCTCCTCCACGGCAAGAACAGCGT
GATGCGGCGGCCGGGCAGTGAGGCGGGAGAGCTGCTGTGTGCCGGAGACTCTCCATACCT
AGACACCATGCGGGTCATGAAGTGGTTCCAGACGGCCCTCACCAAAGCCTGGCACTGCAT
TGCCCACAAGTACGAGTTCGACCTGGCCTTTGGCCAACTGGACACCCCGGGATCCCTCAA
GATCAAGTTCCGCTCGGGGAAGTTCATGCCCTTCAACCTGATTCCTGTGATCCAATGTGA
CGATTCCGACCTGTACTTTGTCTCCCACCTTCCCAGGGAGCCCTTCGGGAATACCCCGGC
ATCCAGCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGAGCCCTACCACTTCCACCCAGAACTCTGGTGCTCTGGCCGCTCCGTGCCCTTGGA
TCGCCAGGGCTATGGCCAGATCAAGGTGGTCCGGGCAGACGAGGACACACTGGGCTGTAT
CTGCGGCAAGACCAAGCTGGGGGAAGACATGCTGTGTCTCCTCCACGGCAAGAACAGCGT
GATGCGGCGGCCGGGCAGTGAGGCGGGAGAGCTGCTGTGTGCCGGAGACTCTCCATACCT
AGACACCATGCGGGTCATGAAGTGGTTCCAGACGGCCCTCACCAAAGCCTGGCACTGCAT
TGCCCACAAGTACGAGTTCGACCTGGCCTTTGGCCAACTGGACACCCCGGGATCCCTCAA
GATCAAGTTCCGCTCGGGGAAGTTCATGCCCTTCAACCTGATTCCTGTGATCCAATGTGA
CGATTCCGACCTGTACTTTGTCTCCCACCTTCCCAGGGAGCCCTTCGGGAATACCCCGGC
ATCCAGCACC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-90, - strand, RNAz p=0.880696
               

               
               120-230, + strand, RNAz p=0.633683

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-90, - strand, RNAz p=0.880696
               

               
               120-230, + strand, RNAz p=0.633683

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               7-96, + strand, RNAmicro p=0.964917

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               7-96, + strand, RNAmicro p=0.964917

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-490, gnl|bosTau2|chr26 (17044340-17044826)
               

               
               1-490, gnl|canFam2|chr28 (19619492-19620477)
               

               
               1-490, gnl|danRer3|chr13 (26030967-26029985)
               

               
               1-490, gnl|dasNov1|scaffold_9222 (93285-92304)
               

               
               1-490, gnl|echTel1|scaffold_310363 (89614-88626)
               

               
               1-490, gnl|fr1|chrUn (8947458-8948428)
               

               
               1-490, gnl|galGal2|chr6 (23323921-23324906)
               

               
               1-490, gnl|hg17|chr10 (106064185-106065170)
               

               
               1-490, gnl|Hg17|chr10 (106065152-106064666)
               

               
               1-490, gnl|loxAfr1|scaffold_136361 (694-1679)
               

               
               1-490, gnl|mm7|chr19 (47797048-47798045)
               

               
               1-490, gnl|Mm7|chr19 (47798027-47797529)
               

               
               1-490, gnl|monDom2|scaffold_14 (58474049-58473061)
               

               
               1-490, gnl|oryCun1|scaffold_198587 (146509-145521)
               

               
               1-490, gnl|panTro1|chr8 (107864130-107865115)
               

               
               1-490, gnl|rheMac2|chr9 (104017448-104018433)
               

               
               1-490, gnl|rn3|chr1 (253550961-253551958)
               

               
               1-490, gnl|tetNig1|chr17 (6833620-6832659)
               

               
               1-490, gnl|xenTro1|scaffold_1363 (113054-112075)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-490, gnl|bosTau2|chr26 (17044340-17044826)
               

               
               1-490, gnl|canFam2|chr28 (19619492-19620477)
               

               
               1-490, gnl|danRer3|chr13 (26030967-26029985)
               

               
               1-490, gnl|dasNov1|scaffold_9222 (93285-92304)
               

               
               1-490, gnl|echTel1|scaffold_310363 (89614-88626)
               

               
               1-490, gnl|fr1|chrUn (8947458-8948428)
               

               
               1-490, gnl|galGal2|chr6 (23323921-23324906)
               

               
               1-490, gnl|hg17|chr10 (106064185-106065170)
               

               
               1-490, gnl|Hg17|chr10 (106065152-106064666)
               

               
               1-490, gnl|loxAfr1|scaffold_136361 (694-1679)
               

               
               1-490, gnl|mm7|chr19 (47797048-47798045)
               

               
               1-490, gnl|Mm7|chr19 (47798027-47797529)
               

               
               1-490, gnl|monDom2|scaffold_14 (58474049-58473061)
               

               
               1-490, gnl|oryCun1|scaffold_198587 (146509-145521)
               

               
               1-490, gnl|panTro1|chr8 (107864130-107865115)
               

               
               1-490, gnl|rheMac2|chr9 (104017448-104018433)
               

               
               1-490, gnl|rn3|chr1 (253550961-253551958)
               

               
               1-490, gnl|tetNig1|chr17 (6833620-6832659)
               

               
               1-490, gnl|xenTro1|scaffold_1363 (113054-112075)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-90, - strand, RNAz p=0.880696
	120-230, + strand, RNAz p=0.633683

	1-490, gnl\|bosTau2\|chr26 (17044340-17044826)
	1-490, gnl\|canFam2\|chr28 (19619492-19620477)
	1-490, gnl\|danRer3\|chr13 (26030967-26029985)
	1-490, gnl\|dasNov1\|scaffold_9222 (93285-92304)
	1-490, gnl\|echTel1\|scaffold_310363 (89614-88626)
	1-490, gnl\|fr1\|chrUn (8947458-8948428)
	1-490, gnl\|galGal2\|chr6 (23323921-23324906)
	1-490, gnl\|hg17\|chr10 (106064185-106065170)
	1-490, gnl\|Hg17\|chr10 (106065152-106064666)
	1-490, gnl\|loxAfr1\|scaffold_136361 (694-1679)
	1-490, gnl\|mm7\|chr19 (47797048-47798045)
	1-490, gnl\|Mm7\|chr19 (47798027-47797529)
	1-490, gnl\|monDom2\|scaffold_14 (58474049-58473061)
	1-490, gnl\|oryCun1\|scaffold_198587 (146509-145521)
	1-490, gnl\|panTro1\|chr8 (107864130-107865115)
	1-490, gnl\|rheMac2\|chr9 (104017448-104018433)
	1-490, gnl\|rn3\|chr1 (253550961-253551958)
	1-490, gnl\|tetNig1\|chr17 (6833620-6832659)
	1-490, gnl\|xenTro1\|scaffold_1363 (113054-112075)