Non-Coding RNA Search

reep24c_e4.y1

Sequence:


               
               GCTGCTGTTATCACCCCCTTTGCGGGATGAGGAACTGAGGCTCGAGGCTCGGGGTGGTGG
GAGGATCCTGCCCACAGTGAGGGGCTGGGTGAGCAGCAGCGCCCTCGCAGCAGGGGCCTG
GCAGTAATCTCCCCCTCCCTGTGCAGGGCTGGGCTTGGGCCCCACCTCTGCAAGGGGCTT
CCAGCCAGGGAAACCCACAGTGGGGTTAAACAGAAAGGCCTCCTGGAGGAAGGAAAAGAT
TCCCAGAGTTCTGTGCTTCAAGCCATTTTGGTAAAAAAAACCTAATTAGAGGTGACAATG
GTGACTTTGTCTGTGTGCTCACTTTTTCCTCCCTCTTCCCCACACCTCCCCCTCTCTCTG
TCCCTCATTTGTTATATCCATGGGAAAACTAGGTAACGTTATAATTACTGAAAATATTGT
GGGTCCATGGAAGCTAGGGGGAGGGCTGTGCCTGAGAGTGCAGGAGGCCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCTGTTATCACCCCCTTTGCGGGATGAGGAACTGAGGCTCGAGGCTCGGGGTGGTGG
GAGGATCCTGCCCACAGTGAGGGGCTGGGTGAGCAGCAGCGCCCTCGCAGCAGGGGCCTG
GCAGTAATCTCCCCCTCCCTGTGCAGGGCTGGGCTTGGGCCCCACCTCTGCAAGGGGCTT
CCAGCCAGGGAAACCCACAGTGGGGTTAAACAGAAAGGCCTCCTGGAGGAAGGAAAAGAT
TCCCAGAGTTCTGTGCTTCAAGCCATTTTGGTAAAAAAAACCTAATTAGAGGTGACAATG
GTGACTTTGTCTGTGTGCTCACTTTTTCCTCCCTCTTCCCCACACCTCCCCCTCTCTCTG
TCCCTCATTTGTTATATCCATGGGAAAACTAGGTAACGTTATAATTACTGAAAATATTGT
GGGTCCATGGAAGCTAGGGGGAGGGCTGTGCCTGAGAGTGCAGGAGGCCCTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-214, - strand, RNAz p=0.810478
               

               
               167-280, + strand, RNAz p=0.515241

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-214, - strand, RNAz p=0.810478
               

               
               167-280, + strand, RNAz p=0.515241

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               88-473, gnl|bosTau2|chr10 (6767445-6767058)
               

               
               88-473, gnl|canFam2|chr30 (33983500-33983972)
               

               
               88-473, gnl|dasNov1|scaffold_22847 (18405-17941)
               

               
               88-473, gnl|echTel1|scaffold_277046 (11601-12039)
               

               
               88-473, gnl|hg17|chr15 (64835208-64835668)
               

               
               88-473, gnl|Hg17|chr15 (64835239-64835628)
               

               
               88-473, gnl|loxAfr1|scaffold_17506 (3443-3918)
               

               
               88-473, gnl|mm7|chr9 (64003012-64002587)
               

               
               88-473, gnl|monDom2|scaffold_12 (45928131-45927703)
               

               
               88-473, gnl|oryCun1|scaffold_135801 (881-417)
               

               
               88-473, gnl|panTro1|chr16 (65342098-65342559)
               

               
               88-473, gnl|rheMac2|chr7 (45300766-45301227)
               

               
               88-473, gnl|rn3|chr8 (68183973-68183477)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-473, gnl|bosTau2|chr10 (6767445-6767058)
               

               
               88-473, gnl|canFam2|chr30 (33983500-33983972)
               

               
               88-473, gnl|dasNov1|scaffold_22847 (18405-17941)
               

               
               88-473, gnl|echTel1|scaffold_277046 (11601-12039)
               

               
               88-473, gnl|hg17|chr15 (64835208-64835668)
               

               
               88-473, gnl|Hg17|chr15 (64835239-64835628)
               

               
               88-473, gnl|loxAfr1|scaffold_17506 (3443-3918)
               

               
               88-473, gnl|mm7|chr9 (64003012-64002587)
               

               
               88-473, gnl|monDom2|scaffold_12 (45928131-45927703)
               

               
               88-473, gnl|oryCun1|scaffold_135801 (881-417)
               

               
               88-473, gnl|panTro1|chr16 (65342098-65342559)
               

               
               88-473, gnl|rheMac2|chr7 (45300766-45301227)
               

               
               88-473, gnl|rn3|chr8 (68183973-68183477)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	120-214, - strand, RNAz p=0.810478
	167-280, + strand, RNAz p=0.515241

	88-473, gnl\|bosTau2\|chr10 (6767445-6767058)
	88-473, gnl\|canFam2\|chr30 (33983500-33983972)
	88-473, gnl\|dasNov1\|scaffold_22847 (18405-17941)
	88-473, gnl\|echTel1\|scaffold_277046 (11601-12039)
	88-473, gnl\|hg17\|chr15 (64835208-64835668)
	88-473, gnl\|Hg17\|chr15 (64835239-64835628)
	88-473, gnl\|loxAfr1\|scaffold_17506 (3443-3918)
	88-473, gnl\|mm7\|chr9 (64003012-64002587)
	88-473, gnl\|monDom2\|scaffold_12 (45928131-45927703)
	88-473, gnl\|oryCun1\|scaffold_135801 (881-417)
	88-473, gnl\|panTro1\|chr16 (65342098-65342559)
	88-473, gnl\|rheMac2\|chr7 (45300766-45301227)
	88-473, gnl\|rn3\|chr8 (68183973-68183477)