Non-Coding RNA Search

reep24c_f19.y1

Sequence:


               
               AGGACAATTAGTCACCAGCGAGACCCTGTAGGAAGAGAGGTTTAAATCAGAGGGATTTAA
TGAGGGTGCTCTGTGCCTTCCCTGAAGCCATGCCCTCCAGCAACTCCCGCCCCCCTGCGT
GCCTAGCCCCGGTGGCTCTCTTCTTGGCTCTGTTGCTCCATCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGACAATTAGTCACCAGCGAGACCCTGTAGGAAGAGAGGTTTAAATCAGAGGGATTTAA
TGAGGGTGCTCTGTGCCTTCCCTGAAGCCATGCCCTCCAGCAACTCCCGCCCCCCTGCGT
GCCTAGCCCCGGTGGCTCTCTTCTTGGCTCTGTTGCTCCATCTCT

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-165, gnl|bosTau2|chr26 (12603167-12603331)
               

               
               1-165, gnl|canFam2|chr28 (15211806-15211971)
               

               
               1-165, gnl|danRer3|chr13 (41080589-41080422)
               

               
               1-165, gnl|dasNov1|scaffold_9914 (11934-12099)
               

               
               1-165, gnl|fr1|chrUn (164879057-164878892)
               

               
               1-165, gnl|galGal2|chr6 (21330976-21330825)
               

               
               1-165, gnl|hg17|chr10 (100985394-100985559)
               

               
               1-165, gnl|Hg17|chr10 (100985608-100985444)
               

               
               1-165, gnl|loxAfr1|scaffold_33062 (7168-7333)
               

               
               1-165, gnl|mm7|chr19 (43282029-43282194)
               

               
               1-165, gnl|Mm7|chr19 (43282243-43282079)
               

               
               1-165, gnl|monDom2|scaffold_14 (22982150-22981984)
               

               
               1-165, gnl|panTro1|chr8 (102725759-102725924)
               

               
               1-165, gnl|rheMac2|chr9 (98833228-98833386)
               

               
               1-165, gnl|rn3|chr1 (247573571-247573408)
               

               
               1-165, gnl|xenTro1|scaffold_51 (2843853-2844008)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-165, gnl|bosTau2|chr26 (12603167-12603331)
               

               
               1-165, gnl|canFam2|chr28 (15211806-15211971)
               

               
               1-165, gnl|danRer3|chr13 (41080589-41080422)
               

               
               1-165, gnl|dasNov1|scaffold_9914 (11934-12099)
               

               
               1-165, gnl|fr1|chrUn (164879057-164878892)
               

               
               1-165, gnl|galGal2|chr6 (21330976-21330825)
               

               
               1-165, gnl|hg17|chr10 (100985394-100985559)
               

               
               1-165, gnl|Hg17|chr10 (100985608-100985444)
               

               
               1-165, gnl|loxAfr1|scaffold_33062 (7168-7333)
               

               
               1-165, gnl|mm7|chr19 (43282029-43282194)
               

               
               1-165, gnl|Mm7|chr19 (43282243-43282079)
               

               
               1-165, gnl|monDom2|scaffold_14 (22982150-22981984)
               

               
               1-165, gnl|panTro1|chr8 (102725759-102725924)
               

               
               1-165, gnl|rheMac2|chr9 (98833228-98833386)
               

               
               1-165, gnl|rn3|chr1 (247573571-247573408)
               

               
               1-165, gnl|xenTro1|scaffold_51 (2843853-2844008)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-165, gnl\|bosTau2\|chr26 (12603167-12603331)
	1-165, gnl\|canFam2\|chr28 (15211806-15211971)
	1-165, gnl\|danRer3\|chr13 (41080589-41080422)
	1-165, gnl\|dasNov1\|scaffold_9914 (11934-12099)
	1-165, gnl\|fr1\|chrUn (164879057-164878892)
	1-165, gnl\|galGal2\|chr6 (21330976-21330825)
	1-165, gnl\|hg17\|chr10 (100985394-100985559)
	1-165, gnl\|Hg17\|chr10 (100985608-100985444)
	1-165, gnl\|loxAfr1\|scaffold_33062 (7168-7333)
	1-165, gnl\|mm7\|chr19 (43282029-43282194)
	1-165, gnl\|Mm7\|chr19 (43282243-43282079)
	1-165, gnl\|monDom2\|scaffold_14 (22982150-22981984)
	1-165, gnl\|panTro1\|chr8 (102725759-102725924)
	1-165, gnl\|rheMac2\|chr9 (98833228-98833386)
	1-165, gnl\|rn3\|chr1 (247573571-247573408)
	1-165, gnl\|xenTro1\|scaffold_51 (2843853-2844008)