Non-Coding RNA Search

reep24c_i11.y1

Sequence:


               
               CACCGAGGGCGGAAGTGTCTTCTTCTTGGATGTTCCCACCCTGACGCTGCTTGAGGGGCA
GACCCTTGGTCCGGACGAGGTTCTGCGAAGTGTGCCCGACGACTACCGGTGCGGGAAGGC
GCTGGGCCCTGTGGAGTCACTCCAGGGTCACCCGCGGGCCCCCAGCAAGATCGTCATTGG
CTATAGCCGCGGCCTGCTGGTCGTCTGGAACCAGGCCGCGCGGTGTGCCGACCGCGTCTT
CCTGGGGAACCAGCAACTGGAGAGCGTGTGCTGGGAGCGCAGTGGCCGCACACTCGTCAG
CTCGCACAGCGACGGCAGCTACGCCATCTGGTCTGTGGACGCCGGCAGCTCCCCGACGGC
ACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCGAGGGCGGAAGTGTCTTCTTCTTGGATGTTCCCACCCTGACGCTGCTTGAGGGGCA
GACCCTTGGTCCGGACGAGGTTCTGCGAAGTGTGCCCGACGACTACCGGTGCGGGAAGGC
GCTGGGCCCTGTGGAGTCACTCCAGGGTCACCCGCGGGCCCCCAGCAAGATCGTCATTGG
CTATAGCCGCGGCCTGCTGGTCGTCTGGAACCAGGCCGCGCGGTGTGCCGACCGCGTCTT
CCTGGGGAACCAGCAACTGGAGAGCGTGTGCTGGGAGCGCAGTGGCCGCACACTCGTCAG
CTCGCACAGCGACGGCAGCTACGCCATCTGGTCTGTGGACGCCGGCAGCTCCCCGACGGC
ACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               89-247, + strand, RNAz p=0.757438

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-247, + strand, RNAz p=0.757438

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               89-253, gnl|bosTau2|chr19 (26606738-26606902)
               

               
               89-253, gnl|canFam2|chr5 (44324830-44324604)
               

               
               89-253, gnl|danRer3|chr3 (37871309-37871505)
               

               
               89-253, gnl|dasNov1|scaffold_96457 (3277-3496)
               

               
               89-253, gnl|echTel1|scaffold_293975 (422-183)
               

               
               89-253, gnl|fr1|chrUn (188310236-188310403)
               

               
               89-253, gnl|galGal2|chrUn (156973278-156973036)
               

               
               89-253, gnl|hg17|chr17 (18078030-18078259)
               

               
               89-253, gnl|Hg17|chr17 (18078050-18078214)
               

               
               89-253, gnl|loxAfr1|scaffold_74379 (2750-2991)
               

               
               89-253, gnl|mm7|chr11 (60787728-60787957)
               

               
               89-253, gnl|Mm7|chr11 (60787749-60787913)
               

               
               89-253, gnl|monDom2|scaffold_55 (12180878-12180637)
               

               
               89-253, gnl|oryCun1|scaffold_111578 (454-681)
               

               
               89-253, gnl|panTro1|chr19 (18485428-18485657)
               

               
               89-253, gnl|rheMac2|chr16 (70870501-70870745)
               

               
               89-253, gnl|rn3|chr10 (46865705-46865934)
               

               
               89-253, gnl|tetNig1|chrUn_random (39303946-39303757)
               

               
               89-253, gnl|xenTro1|scaffold_142 (1136389-1136035)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-253, gnl|bosTau2|chr19 (26606738-26606902)
               

               
               89-253, gnl|canFam2|chr5 (44324830-44324604)
               

               
               89-253, gnl|danRer3|chr3 (37871309-37871505)
               

               
               89-253, gnl|dasNov1|scaffold_96457 (3277-3496)
               

               
               89-253, gnl|echTel1|scaffold_293975 (422-183)
               

               
               89-253, gnl|fr1|chrUn (188310236-188310403)
               

               
               89-253, gnl|galGal2|chrUn (156973278-156973036)
               

               
               89-253, gnl|hg17|chr17 (18078030-18078259)
               

               
               89-253, gnl|Hg17|chr17 (18078050-18078214)
               

               
               89-253, gnl|loxAfr1|scaffold_74379 (2750-2991)
               

               
               89-253, gnl|mm7|chr11 (60787728-60787957)
               

               
               89-253, gnl|Mm7|chr11 (60787749-60787913)
               

               
               89-253, gnl|monDom2|scaffold_55 (12180878-12180637)
               

               
               89-253, gnl|oryCun1|scaffold_111578 (454-681)
               

               
               89-253, gnl|panTro1|chr19 (18485428-18485657)
               

               
               89-253, gnl|rheMac2|chr16 (70870501-70870745)
               

               
               89-253, gnl|rn3|chr10 (46865705-46865934)
               

               
               89-253, gnl|tetNig1|chrUn_random (39303946-39303757)
               

               
               89-253, gnl|xenTro1|scaffold_142 (1136389-1136035)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	89-253, gnl\|bosTau2\|chr19 (26606738-26606902)
	89-253, gnl\|canFam2\|chr5 (44324830-44324604)
	89-253, gnl\|danRer3\|chr3 (37871309-37871505)
	89-253, gnl\|dasNov1\|scaffold_96457 (3277-3496)
	89-253, gnl\|echTel1\|scaffold_293975 (422-183)
	89-253, gnl\|fr1\|chrUn (188310236-188310403)
	89-253, gnl\|galGal2\|chrUn (156973278-156973036)
	89-253, gnl\|hg17\|chr17 (18078030-18078259)
	89-253, gnl\|Hg17\|chr17 (18078050-18078214)
	89-253, gnl\|loxAfr1\|scaffold_74379 (2750-2991)
	89-253, gnl\|mm7\|chr11 (60787728-60787957)
	89-253, gnl\|Mm7\|chr11 (60787749-60787913)
	89-253, gnl\|monDom2\|scaffold_55 (12180878-12180637)
	89-253, gnl\|oryCun1\|scaffold_111578 (454-681)
	89-253, gnl\|panTro1\|chr19 (18485428-18485657)
	89-253, gnl\|rheMac2\|chr16 (70870501-70870745)
	89-253, gnl\|rn3\|chr10 (46865705-46865934)
	89-253, gnl\|tetNig1\|chrUn_random (39303946-39303757)
	89-253, gnl\|xenTro1\|scaffold_142 (1136389-1136035)