Non-Coding RNA Search

reep24c_i19.y1

Sequence:


               
               CAGCCTGGCCAGGAGCCTCCAGTCACCATGATCTTCATGGGCTACCAGAACGTGGAGGAT
GAGGCGGAGACCCAGAAGGTACTGGGCTTGCAGGACACGATCACCGCGGAGCTGGTGGTC
ATTGAGGACGCTGCTGAGCCCAAGGAGCCCGCCCCGCCCAATGGCAGTGCGGCCGAGCCC
CTGGCCACCGAGGGTCCAGGGAGGAGAACCAGGTGGGGCCTGAGGCCCCTGCCAGCGATC
CCCAGGACCTGGACATGAAGAAGCAGCGCTGTAAATGCTGTTCCATCATGTGAGCTGCCC
GGCCCCCAGACCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTGGCCAGGAGCCTCCAGTCACCATGATCTTCATGGGCTACCAGAACGTGGAGGAT
GAGGCGGAGACCCAGAAGGTACTGGGCTTGCAGGACACGATCACCGCGGAGCTGGTGGTC
ATTGAGGACGCTGCTGAGCCCAAGGAGCCCGCCCCGCCCAATGGCAGTGCGGCCGAGCCC
CTGGCCACCGAGGGTCCAGGGAGGAGAACCAGGTGGGGCCTGAGGCCCCTGCCAGCGATC
CCCAGGACCTGGACATGAAGAAGCAGCGCTGTAAATGCTGTTCCATCATGTGAGCTGCCC
GGCCCCCAGACCCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               199-315, - strand, RNAz p=0.736436
               

               
               218-315, - strand, RNAz p=0.629761

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-315, - strand, RNAz p=0.736436
               

               
               218-315, - strand, RNAz p=0.629761

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-315, gnl|bosTau2|chr7 (10661927-10661610)
               

               
               1-315, gnl|canFam2|chr20 (60991641-60991318)
               

               
               1-315, gnl|danRer3|chrUn (58659568-58659239)
               

               
               1-315, gnl|dasNov1|scaffold_15198 (51590-51953)
               

               
               1-315, gnl|echTel1|scaffold_217650 (2046-1706)
               

               
               1-315, gnl|fr1|chrUn (240134086-240133748)
               

               
               1-315, gnl|galGal2|chr28 (2679314-2679669)
               

               
               1-315, gnl|hg17|chr19 (697501-697821)
               

               
               1-315, gnl|Hg17|chr19 (697521-697833)
               

               
               1-315, gnl|mm7|chr10 (79599263-79599579)
               

               
               1-315, gnl|Mm7|chr10 (79599283-79599591)
               

               
               1-315, gnl|monDom2|scaffold_155 (1062258-1061930)
               

               
               1-315, gnl|panTro1|chr20 (752605-752925)
               

               
               1-315, gnl|rheMac2|chr19 (484022-484342)
               

               
               1-315, gnl|rn3|chr7 (11401192-11400876)
               

               
               1-315, gnl|tetNig1|chrUn_random (5928642-5928313)
               

               
               1-315, gnl|xenTro1|scaffold_1174 (211551-211878)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-315, gnl|bosTau2|chr7 (10661927-10661610)
               

               
               1-315, gnl|canFam2|chr20 (60991641-60991318)
               

               
               1-315, gnl|danRer3|chrUn (58659568-58659239)
               

               
               1-315, gnl|dasNov1|scaffold_15198 (51590-51953)
               

               
               1-315, gnl|echTel1|scaffold_217650 (2046-1706)
               

               
               1-315, gnl|fr1|chrUn (240134086-240133748)
               

               
               1-315, gnl|galGal2|chr28 (2679314-2679669)
               

               
               1-315, gnl|hg17|chr19 (697501-697821)
               

               
               1-315, gnl|Hg17|chr19 (697521-697833)
               

               
               1-315, gnl|mm7|chr10 (79599263-79599579)
               

               
               1-315, gnl|Mm7|chr10 (79599283-79599591)
               

               
               1-315, gnl|monDom2|scaffold_155 (1062258-1061930)
               

               
               1-315, gnl|panTro1|chr20 (752605-752925)
               

               
               1-315, gnl|rheMac2|chr19 (484022-484342)
               

               
               1-315, gnl|rn3|chr7 (11401192-11400876)
               

               
               1-315, gnl|tetNig1|chrUn_random (5928642-5928313)
               

               
               1-315, gnl|xenTro1|scaffold_1174 (211551-211878)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	199-315, - strand, RNAz p=0.736436
	218-315, - strand, RNAz p=0.629761

	1-315, gnl\|bosTau2\|chr7 (10661927-10661610)
	1-315, gnl\|canFam2\|chr20 (60991641-60991318)
	1-315, gnl\|danRer3\|chrUn (58659568-58659239)
	1-315, gnl\|dasNov1\|scaffold_15198 (51590-51953)
	1-315, gnl\|echTel1\|scaffold_217650 (2046-1706)
	1-315, gnl\|fr1\|chrUn (240134086-240133748)
	1-315, gnl\|galGal2\|chr28 (2679314-2679669)
	1-315, gnl\|hg17\|chr19 (697501-697821)
	1-315, gnl\|Hg17\|chr19 (697521-697833)
	1-315, gnl\|mm7\|chr10 (79599263-79599579)
	1-315, gnl\|Mm7\|chr10 (79599283-79599591)
	1-315, gnl\|monDom2\|scaffold_155 (1062258-1061930)
	1-315, gnl\|panTro1\|chr20 (752605-752925)
	1-315, gnl\|rheMac2\|chr19 (484022-484342)
	1-315, gnl\|rn3\|chr7 (11401192-11400876)
	1-315, gnl\|tetNig1\|chrUn_random (5928642-5928313)
	1-315, gnl\|xenTro1\|scaffold_1174 (211551-211878)