Non-Coding RNA Search

reep24c_n14.y1

Sequence:


               
               GTTTTTTTTTTTTTTTTTGCTCCTTTCTCACATGTACATGTATTTTCCTCTGTATCTGAC
AAGAAATAGAGCTGTTTAATAATAAGATAAGGTTAATAATTACAAAGCACATCAGGTGCT
TTAGTTCTGCATATTTCAAGTATATTCAAATTGTTATTTTCCAAAAAACCCTAAATGTTA
ATAAATGATTTTTATTTGTTTTTCTATAATACAGTAAAATTAAGACTCCAAATCCTCTTT
CCTTAAAATGGAAATTAACTTTTTGAACAAAACAAGAGTCACATACATTTGATATCTGGC
CCTTTAGGGACCATTAATACCTCCTAAGACAACACTTCAGAGCATTTCCTCTGAAGTACC
CAGAGCATTCATAAACTTCATTTAGTAAGAAAGTGGCTAACCATAACATGAAAGACGGGT
ATCAATTCTTACCTCCTACCATAACATCTCCTTCGTTCCTCAACTGGCTTTTTAAATCTT
TATGACTGGAAATCTAAACAGTATTCAAAAAACCCAGTAACCTCATATTTCCTAAAGGTG
TGGAGTCAGAAGTTACTGTAAAGCTAGTCTATTTTCAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTTTTTTTTTTTGCTCCTTTCTCACATGTACATGTATTTTCCTCTGTATCTGAC
AAGAAATAGAGCTGTTTAATAATAAGATAAGGTTAATAATTACAAAGCACATCAGGTGCT
TTAGTTCTGCATATTTCAAGTATATTCAAATTGTTATTTTCCAAAAAACCCTAAATGTTA
ATAAATGATTTTTATTTGTTTTTCTATAATACAGTAAAATTAAGACTCCAAATCCTCTTT
CCTTAAAATGGAAATTAACTTTTTGAACAAAACAAGAGTCACATACATTTGATATCTGGC
CCTTTAGGGACCATTAATACCTCCTAAGACAACACTTCAGAGCATTTCCTCTGAAGTACC
CAGAGCATTCATAAACTTCATTTAGTAAGAAAGTGGCTAACCATAACATGAAAGACGGGT
ATCAATTCTTACCTCCTACCATAACATCTCCTTCGTTCCTCAACTGGCTTTTTAAATCTT
TATGACTGGAAATCTAAACAGTATTCAAAAAACCCAGTAACCTCATATTTCCTAAAGGTG
TGGAGTCAGAAGTTACTGTAAAGCTAGTCTATTTTCAGGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-99, - strand, RNAz p=0.523362
               

               
               249-408, - strand, RNAz p=0.866742

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-99, - strand, RNAz p=0.523362
               

               
               249-408, - strand, RNAz p=0.866742

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-577, gnl|bosTau2|chr10 (7417045-7416461)
               

               
               2-577, gnl|Hg17|chr15 (65664485-65663563)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-577, gnl|bosTau2|chr10 (7417045-7416461)
               

               
               2-577, gnl|Hg17|chr15 (65664485-65663563)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	2-99, - strand, RNAz p=0.523362
	249-408, - strand, RNAz p=0.866742

	2-577, gnl\|bosTau2\|chr10 (7417045-7416461)
	2-577, gnl\|Hg17\|chr15 (65664485-65663563)