reep25c_i5.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTACTAAGCGAAAGGCTATTGTTGCAGATCGGATGGTAGAAATCCTATTCCATTATGCA GATCGAGCCTTAAAAAAGTGCCCAGACCAGGGAAAAATCCAAGTGATGGAGCAGCATTTT CAGGATATGGTGCCTGTCATAGTTGATTACTGCCTTCTGCTACAGCGAAAGGATCTTTTA TTTAGCCAGGTGTATGACAAATTAAGTGAGAATTCAGTGGCCAAAGGAGTGTTTCTGGAG TGCCTTGAACCATATATATTAAGTGATAAATTGGTGGGGATCACACCCCAGGTAATGAAA GATTTGCTTGTTCATTTCCAAGATAAAAAGTTAATGGAAAATGTGGAAGCCCTCATTGTA CATATGGATATCACCAGTCTGGATATACAGCAGATGGTTCTCATGTGTTGGGAGAATCGG CTCTACGATGCTATGATCTATGTCTACAACAGAGGCATGAATGAATTCATAAGTCCAATG GAGAAACTTTTCAGAGTCATTGCTCCTCCTCTGAATGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTACTAAGCGAAAGGCTATTGTTGCAGATCGGATGGTAGAAATCCTATTCCATTATGCA GATCGAGCCTTAAAAAAGTGCCCAGACCAGGGAAAAATCCAAGTGATGGAGCAGCATTTT CAGGATATGGTGCCTGTCATAGTTGATTACTGCCTTCTGCTACAGCGAAAGGATCTTTTA TTTAGCCAGGTGTATGACAAATTAAGTGAGAATTCAGTGGCCAAAGGAGTGTTTCTGGAG TGCCTTGAACCATATATATTAAGTGATAAATTGGTGGGGATCACACCCCAGGTAATGAAA GATTTGCTTGTTCATTTCCAAGATAAAAAGTTAATGGAAAATGTGGAAGCCCTCATTGTA CATATGGATATCACCAGTCTGGATATACAGCAGATGGTTCTCATGTGTTGGGAGAATCGG CTCTACGATGCTATGATCTATGTCTACAACAGAGGCATGAATGAATTCATAAGTCCAATG GAGAAACTTTTCAGAGTCATTGCTCCTCCTCTGAATGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 250-369, + strand, RNAz p=0.917681 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 250-369, + strand, RNAz p=0.917681 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AB018347, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 33-151, gnl|bosTau2|chr1 (53606428-53606309) | |
| 33-151, gnl|canFam2|chr34 (20704875-20704975) | |
| 33-151, gnl|danRer3|chrNA (85395827-85395924) | |
| 33-151, gnl|dasNov1|scaffold_11109 (20816-20716) | |
| 33-151, gnl|echTel1|scaffold_207215 (9094-8994) | |
| 33-151, gnl|fr1|chrUn (272791183-272791088) | |
| 33-151, gnl|galGal2|chr9 (10108464-10108365) | |
| 33-151, gnl|hg17|chr3 (186071202-186071302) | |
| 33-151, gnl|Hg17|chr3 (186071205-186071329) | |
| 33-151, gnl|loxAfr1|scaffold_51 (92754-92854) | |
| 33-151, gnl|mm7|chr16 (21127829-21127929) | |
| 33-151, gnl|Mm7|chr16 (21127832-21127950) | |
| 33-151, gnl|monDom2|scaffold_180 (737542-737642) | |
| 33-151, gnl|oryCun1|scaffold_199285 (79237-79337) | |
| 33-151, gnl|panTro1|chr2 (190076684-190076784) | |
| 33-151, gnl|rheMac2|chr2 (101781649-101781549) | |
| 33-151, gnl|rn3|chr11 (81868485-81868391) | |
| 33-151, gnl|xenTro1|scaffold_203 (1072271-1072171) | |
| 171-396, gnl|bosTau2|chr1 (53576688-53576463) | |
| 171-396, gnl|canFam2|chr34 (20734269-20734528) | |
| 171-396, gnl|danRer3|chr1 (32287667-32287917) | |
| 171-396, gnl|echTel1|scaffold_309850 (120120-119861) | |
| 171-396, gnl|fr1|chrUn (272790777-272790538) | |
| 171-396, gnl|galGal2|chr9 (10107243-10106977) | |
| 171-396, gnl|hg17|chr3 (186095188-186095447) | |
| 171-396, gnl|Hg17|chr3 (186095193-186095418) | |
| 171-396, gnl|loxAfr1|scaffold_51 (112318-112577) | |
| 171-396, gnl|mm7|chr16 (21149622-21149873) | |
| 171-396, gnl|Mm7|chr16 (21149627-21149852) | |
| 171-396, gnl|monDom2|scaffold_180 (754578-754822) | |
| 171-396, gnl|oryCun1|scaffold_204758 (8811-9070) | |
| 171-396, gnl|panTro1|chr2 (190101655-190101914) | |
| 171-396, gnl|rheMac2|chr2 (101760852-101760593) | |
| 171-396, gnl|rn3|chr11 (81847817-81847574) | |
| 171-396, gnl|tetNig1|chrUn_random (116878453-116878217) | |
| 171-396, gnl|xenTro1|scaffold_203 (1062619-1062382) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-151, gnl|bosTau2|chr1 (53606428-53606309) | |
| 33-151, gnl|canFam2|chr34 (20704875-20704975) | |
| 33-151, gnl|danRer3|chrNA (85395827-85395924) | |
| 33-151, gnl|dasNov1|scaffold_11109 (20816-20716) | |
| 33-151, gnl|echTel1|scaffold_207215 (9094-8994) | |
| 33-151, gnl|fr1|chrUn (272791183-272791088) | |
| 33-151, gnl|galGal2|chr9 (10108464-10108365) | |
| 33-151, gnl|hg17|chr3 (186071202-186071302) | |
| 33-151, gnl|Hg17|chr3 (186071205-186071329) | |
| 33-151, gnl|loxAfr1|scaffold_51 (92754-92854) | |
| 33-151, gnl|mm7|chr16 (21127829-21127929) | |
| 33-151, gnl|Mm7|chr16 (21127832-21127950) | |
| 33-151, gnl|monDom2|scaffold_180 (737542-737642) | |
| 33-151, gnl|oryCun1|scaffold_199285 (79237-79337) | |
| 33-151, gnl|panTro1|chr2 (190076684-190076784) | |
| 33-151, gnl|rheMac2|chr2 (101781649-101781549) | |
| 33-151, gnl|rn3|chr11 (81868485-81868391) | |
| 33-151, gnl|xenTro1|scaffold_203 (1072271-1072171) | |
| 171-396, gnl|bosTau2|chr1 (53576688-53576463) | |
| 171-396, gnl|canFam2|chr34 (20734269-20734528) | |
| 171-396, gnl|danRer3|chr1 (32287667-32287917) | |
| 171-396, gnl|echTel1|scaffold_309850 (120120-119861) | |
| 171-396, gnl|fr1|chrUn (272790777-272790538) | |
| 171-396, gnl|galGal2|chr9 (10107243-10106977) | |
| 171-396, gnl|hg17|chr3 (186095188-186095447) | |
| 171-396, gnl|Hg17|chr3 (186095193-186095418) | |
| 171-396, gnl|loxAfr1|scaffold_51 (112318-112577) | |
| 171-396, gnl|mm7|chr16 (21149622-21149873) | |
| 171-396, gnl|Mm7|chr16 (21149627-21149852) | |
| 171-396, gnl|monDom2|scaffold_180 (754578-754822) | |
| 171-396, gnl|oryCun1|scaffold_204758 (8811-9070) | |
| 171-396, gnl|panTro1|chr2 (190101655-190101914) | |
| 171-396, gnl|rheMac2|chr2 (101760852-101760593) | |
| 171-396, gnl|rn3|chr11 (81847817-81847574) | |
| 171-396, gnl|tetNig1|chrUn_random (116878453-116878217) | |
| 171-396, gnl|xenTro1|scaffold_203 (1062619-1062382) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |