Non-Coding RNA Search

reep26c_m16.y1

Sequence:


               
               GGGTTTTAAAGCAATTTGTATTCCTAGAGATAGGTGAAGGAAAACCTACCTCCCACTCCC
AGGTTCATTATTCACAAGCATTCCATAATTATGTTCACTTAAGATGTGTCTGGCTCTTGT
AAAACTCATGTCTATTAATTGTTATTAGTGTAGATTAAAGACAGAAAATTCAAACTGATA
TTTATGATTTTAGAAACTAAGAATCAGTCATCAGGAGTTTTTTGTTTGTTTGTTTGTTTT
GCTTTTTTGCCAATCCTTGTCCTTCAGGCAGATGTGAATCTGCTGAGGTCCCTGGTTCAG
TCATGTTGCTCAGTGGGGACACTAAAACAGCTAAACTTTGGGGGAGAATTAACATTTTGT
TGTTATTAGCTATCATCACTGAATAGTTTAAAGCTCCTTGGGGTTCCAAAATGAAGAAAA
TTTCTGGTCCATTCATCAAAACGATAAACACTGAGACTATTAGTTAATGTTTATTTTGAT
TAGATTAGCAAGCTTTCCTGTTTCCTCCCGCAGCCAGACTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTTTAAAGCAATTTGTATTCCTAGAGATAGGTGAAGGAAAACCTACCTCCCACTCCC
AGGTTCATTATTCACAAGCATTCCATAATTATGTTCACTTAAGATGTGTCTGGCTCTTGT
AAAACTCATGTCTATTAATTGTTATTAGTGTAGATTAAAGACAGAAAATTCAAACTGATA
TTTATGATTTTAGAAACTAAGAATCAGTCATCAGGAGTTTTTTGTTTGTTTGTTTGTTTT
GCTTTTTTGCCAATCCTTGTCCTTCAGGCAGATGTGAATCTGCTGAGGTCCCTGGTTCAG
TCATGTTGCTCAGTGGGGACACTAAAACAGCTAAACTTTGGGGGAGAATTAACATTTTGT
TGTTATTAGCTATCATCACTGAATAGTTTAAAGCTCCTTGGGGTTCCAAAATGAAGAAAA
TTTCTGGTCCATTCATCAAAACGATAAACACTGAGACTATTAGTTAATGTTTATTTTGAT
TAGATTAGCAAGCTTTCCTGTTTCCTCCCGCAGCCAGACTAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               243-522, gnl|bosTau2|chr26 (22010441-22010165)
               

               
               243-522, gnl|canFam2|chr28 (28270290-28270654)
               

               
               243-522, gnl|dasNov1|scaffold_3163 (66877-67248)
               

               
               243-522, gnl|echTel1|scaffold_296345 (45079-44733)
               

               
               243-522, gnl|hg17|chr10 (116196153-116196513)
               

               
               243-522, gnl|Hg17|chr10 (116196533-116196251)
               

               
               243-522, gnl|loxAfr1|scaffold_63143 (27294-26933)
               

               
               243-522, gnl|mm7|chr19 (56961634-56961947)
               

               
               243-522, gnl|Mm7|chr19 (56961964-56961689)
               

               
               243-522, gnl|monDom2|scaffold_14 (47482414-47482095)
               

               
               243-522, gnl|oryCun1|scaffold_200326 (118702-118369)
               

               
               243-522, gnl|panTro1|chr8 (118360817-118361177)
               

               
               243-522, gnl|rheMac2|chr9 (114099610-114099971)
               

               
               243-522, gnl|rn3|chr1 (263600286-263600607)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               243-522, gnl|bosTau2|chr26 (22010441-22010165)
               

               
               243-522, gnl|canFam2|chr28 (28270290-28270654)
               

               
               243-522, gnl|dasNov1|scaffold_3163 (66877-67248)
               

               
               243-522, gnl|echTel1|scaffold_296345 (45079-44733)
               

               
               243-522, gnl|hg17|chr10 (116196153-116196513)
               

               
               243-522, gnl|Hg17|chr10 (116196533-116196251)
               

               
               243-522, gnl|loxAfr1|scaffold_63143 (27294-26933)
               

               
               243-522, gnl|mm7|chr19 (56961634-56961947)
               

               
               243-522, gnl|Mm7|chr19 (56961964-56961689)
               

               
               243-522, gnl|monDom2|scaffold_14 (47482414-47482095)
               

               
               243-522, gnl|oryCun1|scaffold_200326 (118702-118369)
               

               
               243-522, gnl|panTro1|chr8 (118360817-118361177)
               

               
               243-522, gnl|rheMac2|chr9 (114099610-114099971)
               

               
               243-522, gnl|rn3|chr1 (263600286-263600607)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	243-522, gnl\|bosTau2\|chr26 (22010441-22010165)
	243-522, gnl\|canFam2\|chr28 (28270290-28270654)
	243-522, gnl\|dasNov1\|scaffold_3163 (66877-67248)
	243-522, gnl\|echTel1\|scaffold_296345 (45079-44733)
	243-522, gnl\|hg17\|chr10 (116196153-116196513)
	243-522, gnl\|Hg17\|chr10 (116196533-116196251)
	243-522, gnl\|loxAfr1\|scaffold_63143 (27294-26933)
	243-522, gnl\|mm7\|chr19 (56961634-56961947)
	243-522, gnl\|Mm7\|chr19 (56961964-56961689)
	243-522, gnl\|monDom2\|scaffold_14 (47482414-47482095)
	243-522, gnl\|oryCun1\|scaffold_200326 (118702-118369)
	243-522, gnl\|panTro1\|chr8 (118360817-118361177)
	243-522, gnl\|rheMac2\|chr9 (114099610-114099971)
	243-522, gnl\|rn3\|chr1 (263600286-263600607)