reep29c_a1.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAACAACGAGAGGTTGCAGATAACGGAAAGAGAGTCAGAGCCGTGGAATGGAGGGCAC CGCAGCTCGAGTGAAGAGTTGGCTTGGAAATGAAATTGAAGTTATGGTCAGTACTGAGGA AGCCAAACGCCACCTGAATGACCTTCTCGAAGACAGAAAGATCCTGGCTCAGGATCTGGC TCAACTCAAAGAAAAAATGGAAGTCTGGGGAAAATCCACCTCCTAAACTTCGGAGGCGTA CGTTCTCACTTGCTGAACTGCGTGGTCAAGTTACTGAGTCAGAAGATTCCATTACAAAGC AGATTGAAAGCCTAGAGACTGAAATGGAACTCAGGAGTGCTCAGATTGCCGACCTACAAC AGAAGCTGCTAGACGCAGAAAGTGAAGATAGGCCAAAACACCGCTGGGAGAATATTGCTA CCATTCTGGAAGCCAAGTGTGCCCTGAAATATTTAATTGGAGAGCTGGTCTCCTCCAAAA TACAGGTCAGCAAGCTTGAAAGCAGTCTGAAACAGAACAAGGCCAGCTGTGCTGACATGC A |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAACAACGAGAGGTTGCAGATAACGGAAAGAGAGTCAGAGCCGTGGAATGGAGGGCAC CGCAGCTCGAGTGAAGAGTTGGCTTGGAAATGAAATTGAAGTTATGGTCAGTACTGAGGA AGCCAAACGCCACCTGAATGACCTTCTCGAAGACAGAAAGATCCTGGCTCAGGATCTGGC TCAACTCAAAGAAAAAATGGAAGTCTGGGGAAAATCCACCTCCTAAACTTCGGAGGCGTA CGTTCTCACTTGCTGAACTGCGTGGTCAAGTTACTGAGTCAGAAGATTCCATTACAAAGC AGATTGAAAGCCTAGAGACTGAAATGGAACTCAGGAGTGCTCAGATTGCCGACCTACAAC AGAAGCTGCTAGACGCAGAAAGTGAAGATAGGCCAAAACACCGCTGGGAGAATATTGCTA CCATTCTGGAAGCCAAGTGTGCCCTGAAATATTTAATTGGAGAGCTGGTCTCCTCCAAAA TACAGGTCAGCAAGCTTGAAAGCAGTCTGAAACAGAACAAGGCCAGCTGTGCTGACATGC A |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 116-233, - strand, RNAz p=0.561645 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 116-233, - strand, RNAz p=0.561645 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 75-233, gnl|bosTau2|chrX (20501741-20501584) | |
| 75-233, gnl|canFam2|chrX (57769285-57769454) | |
| 75-233, gnl|canFam2|chrX (57769289-57769444) | |
| 75-233, gnl|danRer3|chr21 (40104955-40104786) | |
| 75-233, gnl|danRer3|chr21 (40104951-40104796) | |
| 75-233, gnl|dasNov1|scaffold_5793 (8227-8396) | |
| 75-233, gnl|dasNov1|scaffold_74119 (5986-6139) | |
| 75-233, gnl|echTel1|scaffold_314543 (42150-41981) | |
| 75-233, gnl|echTel1|scaffold_314543 (42146-41991) | |
| 75-233, gnl|fr1|chrUn (5761814-5761647) | |
| 75-233, gnl|fr1|chrUn (5761812-5761657) | |
| 75-233, gnl|galGal2|chr4 (502753-502588) | |
| 75-233, gnl|galGal2|chr4 (502749-502594) | |
| 75-233, gnl|hg17|chr5 (154375845-154376000) | |
| 75-233, gnl|hg17|chrX (69398538-69398707) | |
| 75-233, gnl|Hg17|chrX (69398540-69398697) | |
| 75-233, gnl|loxAfr1|scaffold_17241 (48033-47864) | |
| 75-233, gnl|loxAfr1|scaffold_17241 (48029-47874) | |
| 75-233, gnl|mm7|chr12 (98643183-98643338) | |
| 75-233, gnl|mm7|chrX (96039143-96039312) | |
| 75-233, gnl|Mm7|chrX (96039145-96039302) | |
| 75-233, gnl|monDom2|scaffold_188 (680423-680592) | |
| 75-233, gnl|monDom2|scaffold_188 (680427-680582) | |
| 75-233, gnl|oryCun1|scaffold_196874 (10305-10474) | |
| 75-233, gnl|oryCun1|scaffold_196874 (10309-10464) | |
| 75-233, gnl|panTro1|chr4 (161327399-161327546) | |
| 75-233, gnl|panTro1|chrX (71566208-71566377) | |
| 75-233, gnl|rheMac2|chr6 (151385159-151385314) | |
| 75-233, gnl|rheMac2|chrX (69369373-69369542) | |
| 75-233, gnl|rn3|chr6 (125422770-125422925) | |
| 75-233, gnl|rn3|chrX (88778693-88778862) | |
| 75-233, gnl|tetNig1|chr7 (6931653-6931819) | |
| 75-233, gnl|tetNig1|chr7 (6931654-6931809) | |
| 75-233, gnl|xenTro1|scaffold_482 (878261-878096) | |
| 75-233, gnl|xenTro1|scaffold_482 (878257-878102) | |
| 333-463, gnl|bosTau2|chrX (20496710-20496580) | |
| 333-463, gnl|canFam2|chrX (57774348-57774444) | |
| 333-463, gnl|danRer3|chr21 (40103917-40103821) | |
| 333-463, gnl|dasNov1|scaffold_74119 (6241-6337) | |
| 333-463, gnl|fr1|chrUn (5761330-5761234) | |
| 333-463, gnl|galGal2|chr4 (501545-501449) | |
| 333-463, gnl|hg17|chr5 (154376101-154376197) | |
| 333-463, gnl|Hg17|chrX (69405435-69405565) | |
| 333-463, gnl|loxAfr1|scaffold_17241 (32650-32557) | |
| 333-463, gnl|mm7|chr12 (98643439-98643535) | |
| 333-463, gnl|Mm7|chrX (96041231-96041361) | |
| 333-463, gnl|monDom2|scaffold_188 (689372-689468) | |
| 333-463, gnl|oryCun1|scaffold_196874 (17043-17139) | |
| 333-463, gnl|panTro1|chr4 (161327711-161327804) | |
| 333-463, gnl|rheMac2|chr6 (151385415-151385511) | |
| 333-463, gnl|rn3|chr6 (125423026-125423122) | |
| 333-463, gnl|tetNig1|chr7 (6932126-6932222) | |
| 333-463, gnl|xenTro1|scaffold_482 (877658-877559) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 75-233, gnl|bosTau2|chrX (20501741-20501584) | |
| 75-233, gnl|canFam2|chrX (57769285-57769454) | |
| 75-233, gnl|canFam2|chrX (57769289-57769444) | |
| 75-233, gnl|danRer3|chr21 (40104955-40104786) | |
| 75-233, gnl|danRer3|chr21 (40104951-40104796) | |
| 75-233, gnl|dasNov1|scaffold_5793 (8227-8396) | |
| 75-233, gnl|dasNov1|scaffold_74119 (5986-6139) | |
| 75-233, gnl|echTel1|scaffold_314543 (42150-41981) | |
| 75-233, gnl|echTel1|scaffold_314543 (42146-41991) | |
| 75-233, gnl|fr1|chrUn (5761814-5761647) | |
| 75-233, gnl|fr1|chrUn (5761812-5761657) | |
| 75-233, gnl|galGal2|chr4 (502753-502588) | |
| 75-233, gnl|galGal2|chr4 (502749-502594) | |
| 75-233, gnl|hg17|chr5 (154375845-154376000) | |
| 75-233, gnl|hg17|chrX (69398538-69398707) | |
| 75-233, gnl|Hg17|chrX (69398540-69398697) | |
| 75-233, gnl|loxAfr1|scaffold_17241 (48033-47864) | |
| 75-233, gnl|loxAfr1|scaffold_17241 (48029-47874) | |
| 75-233, gnl|mm7|chr12 (98643183-98643338) | |
| 75-233, gnl|mm7|chrX (96039143-96039312) | |
| 75-233, gnl|Mm7|chrX (96039145-96039302) | |
| 75-233, gnl|monDom2|scaffold_188 (680423-680592) | |
| 75-233, gnl|monDom2|scaffold_188 (680427-680582) | |
| 75-233, gnl|oryCun1|scaffold_196874 (10305-10474) | |
| 75-233, gnl|oryCun1|scaffold_196874 (10309-10464) | |
| 75-233, gnl|panTro1|chr4 (161327399-161327546) | |
| 75-233, gnl|panTro1|chrX (71566208-71566377) | |
| 75-233, gnl|rheMac2|chr6 (151385159-151385314) | |
| 75-233, gnl|rheMac2|chrX (69369373-69369542) | |
| 75-233, gnl|rn3|chr6 (125422770-125422925) | |
| 75-233, gnl|rn3|chrX (88778693-88778862) | |
| 75-233, gnl|tetNig1|chr7 (6931653-6931819) | |
| 75-233, gnl|tetNig1|chr7 (6931654-6931809) | |
| 75-233, gnl|xenTro1|scaffold_482 (878261-878096) | |
| 75-233, gnl|xenTro1|scaffold_482 (878257-878102) | |
| 333-463, gnl|bosTau2|chrX (20496710-20496580) | |
| 333-463, gnl|canFam2|chrX (57774348-57774444) | |
| 333-463, gnl|danRer3|chr21 (40103917-40103821) | |
| 333-463, gnl|dasNov1|scaffold_74119 (6241-6337) | |
| 333-463, gnl|fr1|chrUn (5761330-5761234) | |
| 333-463, gnl|galGal2|chr4 (501545-501449) | |
| 333-463, gnl|hg17|chr5 (154376101-154376197) | |
| 333-463, gnl|Hg17|chrX (69405435-69405565) | |
| 333-463, gnl|loxAfr1|scaffold_17241 (32650-32557) | |
| 333-463, gnl|mm7|chr12 (98643439-98643535) | |
| 333-463, gnl|Mm7|chrX (96041231-96041361) | |
| 333-463, gnl|monDom2|scaffold_188 (689372-689468) | |
| 333-463, gnl|oryCun1|scaffold_196874 (17043-17139) | |
| 333-463, gnl|panTro1|chr4 (161327711-161327804) | |
| 333-463, gnl|rheMac2|chr6 (151385415-151385511) | |
| 333-463, gnl|rn3|chr6 (125423026-125423122) | |
| 333-463, gnl|tetNig1|chr7 (6932126-6932222) | |
| 333-463, gnl|xenTro1|scaffold_482 (877658-877559) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |