Non-Coding RNA Search

reep30c_e2.y1

Sequence:


               
               CTCTGAACATTCAGATTGACACCTACAGTTACAACAACCGCAGCAACAAGCCCGTGCACC
GGGCCTACTGCCAGATCAAGGTCTTCTGTGACAAGGTGAGGCAGGGGCCGGGCGGGGCCT
TCCTCGCGGGAAAAGGCCAGCGTCTTTGGAATGTTTGAGTCCCTAAGGACGTCTGGCTGG
TCACACAGACAGCTTCTTGCCAATGAGCTACAAATGTGTTCTGGCCACGCCAAGTTAGGT
CCCACAGGGGAACAAAATAATCTCCTTCCGACTGAAAAGCCAGAAGGGGCGACAAGCACA
TTTTGTTGGGCGGGTCCAATGAGGGCGACATCCCGCTGCCCCCGGCCCTCGCGGGGCCCT
GCGGGCAGTGGCCGGGGTCGAGGAGCTGTGCCTGAGCTCTGCCGCGGGCCCTGCGGACAG
TCACCACCGGCTCACCTCCCTCCGGCCCTCGGCAGGTGGTCAGCCAGCTCGGCGGGCAGG
AGTCACAGGGTCGCAGGCCTCTGACAGCGGCCGGGAGGCCGGGCAAGAGCGTGGTTTTGG
CGACAGGTCTTTGCCCTCATGTGCAGAGGAGAGAGATGGGCGCTTTGGGCAGGTGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGAACATTCAGATTGACACCTACAGTTACAACAACCGCAGCAACAAGCCCGTGCACC
GGGCCTACTGCCAGATCAAGGTCTTCTGTGACAAGGTGAGGCAGGGGCCGGGCGGGGCCT
TCCTCGCGGGAAAAGGCCAGCGTCTTTGGAATGTTTGAGTCCCTAAGGACGTCTGGCTGG
TCACACAGACAGCTTCTTGCCAATGAGCTACAAATGTGTTCTGGCCACGCCAAGTTAGGT
CCCACAGGGGAACAAAATAATCTCCTTCCGACTGAAAAGCCAGAAGGGGCGACAAGCACA
TTTTGTTGGGCGGGTCCAATGAGGGCGACATCCCGCTGCCCCCGGCCCTCGCGGGGCCCT
GCGGGCAGTGGCCGGGGTCGAGGAGCTGTGCCTGAGCTCTGCCGCGGGCCCTGCGGACAG
TCACCACCGGCTCACCTCCCTCCGGCCCTCGGCAGGTGGTCAGCCAGCTCGGCGGGCAGG
AGTCACAGGGTCGCAGGCCTCTGACAGCGGCCGGGAGGCCGGGCAAGAGCGTGGTTTTGG
CGACAGGTCTTTGCCCTCATGTGCAGAGGAGAGAGATGGGCGCTTTGGGCAGGTGCAG

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-102, gnl|bosTau2|chr11 (68053220-68053119)
               

               
               1-102, gnl|canFam2|chr17 (9960952-9961150)
               

               
               1-102, gnl|danRer3|chr17 (24988025-24987840)
               

               
               1-102, gnl|dasNov1|scaffold_7898 (62276-62078)
               

               
               1-102, gnl|echTel1|scaffold_293690 (99801-99998)
               

               
               1-102, gnl|fr1|chrUn (134332686-134332487)
               

               
               1-102, gnl|galGal2|chr3 (94730390-94730589)
               

               
               1-102, gnl|hg17|chr2 (10076821-10077019)
               

               
               1-102, gnl|Hg17|chr2 (10076914-10077013)
               

               
               1-102, gnl|loxAfr1|scaffold_8568 (22942-22743)
               

               
               1-102, gnl|mm7|chr12 (22439380-22439576)
               

               
               1-102, gnl|Mm7|chr12 (22439471-22439570)
               

               
               1-102, gnl|monDom2|scaffold_1 (128031296-128031495)
               

               
               1-102, gnl|oryCun1|scaffold_192193 (3788-3981)
               

               
               1-102, gnl|panTro1|chr12 (10756892-10757090)
               

               
               1-102, gnl|rheMac2|chr13 (10083074-10083272)
               

               
               1-102, gnl|rn3|chr6 (42251243-42251440)
               

               
               1-102, gnl|tetNig1|chr10 (5875016-5874844)
               

               
               1-102, gnl|xenTro1|scaffold_469 (217901-218080)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-102, gnl|bosTau2|chr11 (68053220-68053119)
               

               
               1-102, gnl|canFam2|chr17 (9960952-9961150)
               

               
               1-102, gnl|danRer3|chr17 (24988025-24987840)
               

               
               1-102, gnl|dasNov1|scaffold_7898 (62276-62078)
               

               
               1-102, gnl|echTel1|scaffold_293690 (99801-99998)
               

               
               1-102, gnl|fr1|chrUn (134332686-134332487)
               

               
               1-102, gnl|galGal2|chr3 (94730390-94730589)
               

               
               1-102, gnl|hg17|chr2 (10076821-10077019)
               

               
               1-102, gnl|Hg17|chr2 (10076914-10077013)
               

               
               1-102, gnl|loxAfr1|scaffold_8568 (22942-22743)
               

               
               1-102, gnl|mm7|chr12 (22439380-22439576)
               

               
               1-102, gnl|Mm7|chr12 (22439471-22439570)
               

               
               1-102, gnl|monDom2|scaffold_1 (128031296-128031495)
               

               
               1-102, gnl|oryCun1|scaffold_192193 (3788-3981)
               

               
               1-102, gnl|panTro1|chr12 (10756892-10757090)
               

               
               1-102, gnl|rheMac2|chr13 (10083074-10083272)
               

               
               1-102, gnl|rn3|chr6 (42251243-42251440)
               

               
               1-102, gnl|tetNig1|chr10 (5875016-5874844)
               

               
               1-102, gnl|xenTro1|scaffold_469 (217901-218080)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-102, gnl\|bosTau2\|chr11 (68053220-68053119)
	1-102, gnl\|canFam2\|chr17 (9960952-9961150)
	1-102, gnl\|danRer3\|chr17 (24988025-24987840)
	1-102, gnl\|dasNov1\|scaffold_7898 (62276-62078)
	1-102, gnl\|echTel1\|scaffold_293690 (99801-99998)
	1-102, gnl\|fr1\|chrUn (134332686-134332487)
	1-102, gnl\|galGal2\|chr3 (94730390-94730589)
	1-102, gnl\|hg17\|chr2 (10076821-10077019)
	1-102, gnl\|Hg17\|chr2 (10076914-10077013)
	1-102, gnl\|loxAfr1\|scaffold_8568 (22942-22743)
	1-102, gnl\|mm7\|chr12 (22439380-22439576)
	1-102, gnl\|Mm7\|chr12 (22439471-22439570)
	1-102, gnl\|monDom2\|scaffold_1 (128031296-128031495)
	1-102, gnl\|oryCun1\|scaffold_192193 (3788-3981)
	1-102, gnl\|panTro1\|chr12 (10756892-10757090)
	1-102, gnl\|rheMac2\|chr13 (10083074-10083272)
	1-102, gnl\|rn3\|chr6 (42251243-42251440)
	1-102, gnl\|tetNig1\|chr10 (5875016-5874844)
	1-102, gnl\|xenTro1\|scaffold_469 (217901-218080)