Non-Coding RNA Search

reep30c_n9.y1

Sequence:


               
               GCCCGCACAGGATGCTGGCCCCTGCCTGGTTAGGGGCACTCAGTCAAGGCCAGTCCTTTC
CTGGGTATTTATTCTCTATTTATTGGGGACAGGAGAAGAAGAGCCCCACCTGGGTGGGGC
AGCTCCTCCAGCCCTTCCTTCCCTCCCTGCCTGGCCACTCTACCTCCTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGCACAGGATGCTGGCCCCTGCCTGGTTAGGGGCACTCAGTCAAGGCCAGTCCTTTC
CTGGGTATTTATTCTCTATTTATTGGGGACAGGAGAAGAAGAGCCCCACCTGGGTGGGGC
AGCTCCTCCAGCCCTTCCTTCCCTCCCTGCCTGGCCACTCTACCTCCTCTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               5-171, + strand, RNAz p=0.999823

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-171, + strand, RNAz p=0.999823

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               5-171, 193646 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE723733.1|), 
blast E-value=1.4013e-45, identity=89.88% 
               

               
               6-157, UI-E-EO1-aja-n-21-0-UI.s1 UI-E-EO1 Homo sapiens cDNA clone 
(gb|BU741943.1|), blast E-value=2e-22, identity=84.97% 
               

               
               6-157, AGENCOURT_10473651 NIH_MGC_107 Homo sapiens cDNA clone (gb|BU856852.1|), 
blast E-value=2e-22, identity=84.97% 
               

               
               5-129, 4099045 BARC 10BOV Bos taurus cDNA clone 10BOV5_H12 3', mRNA 
(gb|CK958330.1|), blast E-value=4e-30, identity=89.68% 
               

               
               5-156, 4099429 BARC 10BOV Bos taurus cDNA clone 10BOV5_H12 5', mRNA 
(gb|CK958599.1|), blast E-value=1.99993e-41, identity=90.2% 
               

               
               5-171, BovGen_10368 normal cattle brain Bos taurus cDNA clone (gb|CO882043.1|), 
blast E-value=1.4013e-45, identity=89.88%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               5-171, 193646 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE723733.1|), 
blast E-value=1.4013e-45, identity=89.88% 
               

               
               6-157, UI-E-EO1-aja-n-21-0-UI.s1 UI-E-EO1 Homo sapiens cDNA clone 
(gb|BU741943.1|), blast E-value=2e-22, identity=84.97% 
               

               
               6-157, AGENCOURT_10473651 NIH_MGC_107 Homo sapiens cDNA clone (gb|BU856852.1|), 
blast E-value=2e-22, identity=84.97% 
               

               
               5-129, 4099045 BARC 10BOV Bos taurus cDNA clone 10BOV5_H12 3', mRNA 
(gb|CK958330.1|), blast E-value=4e-30, identity=89.68% 
               

               
               5-156, 4099429 BARC 10BOV Bos taurus cDNA clone 10BOV5_H12 5', mRNA 
(gb|CK958599.1|), blast E-value=1.99993e-41, identity=90.2% 
               

               
               5-171, BovGen_10368 normal cattle brain Bos taurus cDNA clone (gb|CO882043.1|), 
blast E-value=1.4013e-45, identity=89.88%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004186, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004186, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-171, gnl|bosTau2|chr22 (38437484-38437651)
               

               
               5-171, gnl|Hg17|chr3 (50201034-50201215)
               

               
               5-171, gnl|Mm7|chr9 (107411405-107411231)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-171, gnl|bosTau2|chr22 (38437484-38437651)
               

               
               5-171, gnl|Hg17|chr3 (50201034-50201215)
               

               
               5-171, gnl|Mm7|chr9 (107411405-107411231)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	5-171, 193646 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE723733.1\|), blast E-value=1.4013e-45, identity=89.88%
	6-157, UI-E-EO1-aja-n-21-0-UI.s1 UI-E-EO1 Homo sapiens cDNA clone (gb\|BU741943.1\|), blast E-value=2e-22, identity=84.97%
	6-157, AGENCOURT_10473651 NIH_MGC_107 Homo sapiens cDNA clone (gb\|BU856852.1\|), blast E-value=2e-22, identity=84.97%
	5-129, 4099045 BARC 10BOV Bos taurus cDNA clone 10BOV5_H12 3', mRNA (gb\|CK958330.1\|), blast E-value=4e-30, identity=89.68%
	5-156, 4099429 BARC 10BOV Bos taurus cDNA clone 10BOV5_H12 5', mRNA (gb\|CK958599.1\|), blast E-value=1.99993e-41, identity=90.2%
	5-171, BovGen_10368 normal cattle brain Bos taurus cDNA clone (gb\|CO882043.1\|), blast E-value=1.4013e-45, identity=89.88%

	5-171, gnl\|bosTau2\|chr22 (38437484-38437651)
	5-171, gnl\|Hg17\|chr3 (50201034-50201215)
	5-171, gnl\|Mm7\|chr9 (107411405-107411231)