Non-Coding RNA Search

reep33c_j20.y1

Sequence:


               
               CTGAGTTTGTGTTCTCCGTCCTGGTGCGAGAGAGCAAAGCCAGTGCAGTGGGTGACGATG
ACAAGGTTTACTACTTCTTCACGGAGCGTGCCGCTGAGGAGGGCTCTGGCAGCTTTGCTC
AGAGCCGCAGCAGCCACCGTGTGGCCCGTGTGGCCCGTGTGTGCAAGGGGGACCTGGGAG
GGAAGAAGATCCTGCAGAAGAAGTGGACATCCTTCTTAAAGGCGCGTCTCATCTGCCACA
TCCCACAATATGAGACACTACGTGGTGTCTGCAGCCTGGAAACCGATACCTCAGCCCGCA
CGCACTTCTATACAGCCTTCACGCTGACCACACAGTGGAAGACCCTGGAGGCCTCGGCCA
TCTGCCGCTATGACCTGGCCGAGGTGCAGGCTGTCTTTGCAGGCCCCTACATGGAATACC
AGGATGGTGTCCGGCGCTGGGGCCGCTACGAGGGAGGGGTGCCAGAGCCCCGGCCTGGCT
CGTGCATTACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAGTTTGTGTTCTCCGTCCTGGTGCGAGAGAGCAAAGCCAGTGCAGTGGGTGACGATG
ACAAGGTTTACTACTTCTTCACGGAGCGTGCCGCTGAGGAGGGCTCTGGCAGCTTTGCTC
AGAGCCGCAGCAGCCACCGTGTGGCCCGTGTGGCCCGTGTGTGCAAGGGGGACCTGGGAG
GGAAGAAGATCCTGCAGAAGAAGTGGACATCCTTCTTAAAGGCGCGTCTCATCTGCCACA
TCCCACAATATGAGACACTACGTGGTGTCTGCAGCCTGGAAACCGATACCTCAGCCCGCA
CGCACTTCTATACAGCCTTCACGCTGACCACACAGTGGAAGACCCTGGAGGCCTCGGCCA
TCTGCCGCTATGACCTGGCCGAGGTGCAGGCTGTCTTTGCAGGCCCCTACATGGAATACC
AGGATGGTGTCCGGCGCTGGGGCCGCTACGAGGGAGGGGTGCCAGAGCCCCGGCCTGGCT
CGTGCATTACAGA

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               1-168, gnl|bosTau2|chr26 (13385156-13385323)
               

               
               1-168, gnl|canFam2|chr28 (16663932-16664072)
               

               
               1-168, gnl|danRer3|chr13 (9461880-9462000)
               

               
               1-168, gnl|dasNov1|scaffold_88822 (3794-3938)
               

               
               1-168, gnl|echTel1|scaffold_277702 (1262-1404)
               

               
               1-168, gnl|fr1|chrUn (50071590-50071715)
               

               
               1-168, gnl|galGal2|chr6 (22167605-22167461)
               

               
               1-168, gnl|hg17|chr10 (102728562-102728704)
               

               
               1-168, gnl|Hg17|chr10 (102728599-102728766)
               

               
               1-168, gnl|loxAfr1|scaffold_106177 (1750-1893)
               

               
               1-168, gnl|mm7|chr19 (44891128-44891267)
               

               
               1-168, gnl|Mm7|chr19 (44891168-44891329)
               

               
               1-168, gnl|monDom2|scaffold_14 (62707495-62707370)
               

               
               1-168, gnl|oryCun1|scaffold_211698 (154350-154493)
               

               
               1-168, gnl|panTro1|chr8_random (3369698-3369840)
               

               
               1-168, gnl|rheMac2|chr9 (100589723-100589865)
               

               
               1-168, gnl|rn3|chr1 (250322943-250323082)
               

               
               1-168, gnl|tetNig1|chr2 (903683-903808)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-168, gnl|bosTau2|chr26 (13385156-13385323)
               

               
               1-168, gnl|canFam2|chr28 (16663932-16664072)
               

               
               1-168, gnl|danRer3|chr13 (9461880-9462000)
               

               
               1-168, gnl|dasNov1|scaffold_88822 (3794-3938)
               

               
               1-168, gnl|echTel1|scaffold_277702 (1262-1404)
               

               
               1-168, gnl|fr1|chrUn (50071590-50071715)
               

               
               1-168, gnl|galGal2|chr6 (22167605-22167461)
               

               
               1-168, gnl|hg17|chr10 (102728562-102728704)
               

               
               1-168, gnl|Hg17|chr10 (102728599-102728766)
               

               
               1-168, gnl|loxAfr1|scaffold_106177 (1750-1893)
               

               
               1-168, gnl|mm7|chr19 (44891128-44891267)
               

               
               1-168, gnl|Mm7|chr19 (44891168-44891329)
               

               
               1-168, gnl|monDom2|scaffold_14 (62707495-62707370)
               

               
               1-168, gnl|oryCun1|scaffold_211698 (154350-154493)
               

               
               1-168, gnl|panTro1|chr8_random (3369698-3369840)
               

               
               1-168, gnl|rheMac2|chr9 (100589723-100589865)
               

               
               1-168, gnl|rn3|chr1 (250322943-250323082)
               

               
               1-168, gnl|tetNig1|chr2 (903683-903808)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-168, gnl\|bosTau2\|chr26 (13385156-13385323)
	1-168, gnl\|canFam2\|chr28 (16663932-16664072)
	1-168, gnl\|danRer3\|chr13 (9461880-9462000)
	1-168, gnl\|dasNov1\|scaffold_88822 (3794-3938)
	1-168, gnl\|echTel1\|scaffold_277702 (1262-1404)
	1-168, gnl\|fr1\|chrUn (50071590-50071715)
	1-168, gnl\|galGal2\|chr6 (22167605-22167461)
	1-168, gnl\|hg17\|chr10 (102728562-102728704)
	1-168, gnl\|Hg17\|chr10 (102728599-102728766)
	1-168, gnl\|loxAfr1\|scaffold_106177 (1750-1893)
	1-168, gnl\|mm7\|chr19 (44891128-44891267)
	1-168, gnl\|Mm7\|chr19 (44891168-44891329)
	1-168, gnl\|monDom2\|scaffold_14 (62707495-62707370)
	1-168, gnl\|oryCun1\|scaffold_211698 (154350-154493)
	1-168, gnl\|panTro1\|chr8_random (3369698-3369840)
	1-168, gnl\|rheMac2\|chr9 (100589723-100589865)
	1-168, gnl\|rn3\|chr1 (250322943-250323082)
	1-168, gnl\|tetNig1\|chr2 (903683-903808)