reep33c_k8.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCGCCGCGGGGACTGCACCGCCCGCCCTGCCGGACCCGCCCCGACCGGGGCTCGCCGC CTGCAGCTGCCGCAGTACCGCGACCTCGGGCCCCGCGCCGGCTATGGCTGTACCCTGGGG CTGAGCGCACAGGCTGTGTGACCGAGATTCCTGAGACAGACAGACAGACACTGAGGAGAG GAGAGGAAGGCGGGGCGGGCTCCTGGCAAGGCGTCTGCTCCTGAACCAAGACCTGCCAAG ATGGAGAAGGAGGAGGAGACAACCCGGGAGCTGCTGCTGCCCAACTGGCAGGGCAGCGGC TCCCACGGGCTGACCATCGCCCAGAGGGACGACGGCGTCTATGTGCAGGAGGTGATGCAG AACTCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCGCCGCGGGGACTGCACCGCCCGCCCTGCCGGACCCGCCCCGACCGGGGCTCGCCGC CTGCAGCTGCCGCAGTACCGCGACCTCGGGCCCCGCGCCGGCTATGGCTGTACCCTGGGG CTGAGCGCACAGGCTGTGTGACCGAGATTCCTGAGACAGACAGACAGACACTGAGGAGAG GAGAGGAAGGCGGGGCGGGCTCCTGGCAAGGCGTCTGCTCCTGAACCAAGACCTGCCAAG ATGGAGAAGGAGGAGGAGACAACCCGGGAGCTGCTGCTGCCCAACTGGCAGGGCAGCGGC TCCCACGGGCTGACCATCGCCCAGAGGGACGACGGCGTCTATGTGCAGGAGGTGATGCAG AACTCCCC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 239-368, - strand, RNAz p=0.998283 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 239-368, - strand, RNAz p=0.998283 |
| Similar Transcript(s): 6 entry(ies) | More info |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
| 239-368, BW975869 full-length enriched swine cDNA library, adult trachea Sus (dbj|BW975869.1|), blast E-value=0, identity=100% | |
| 251-368, DB475396 RIKEN full-length enriched human cDNA library, hippocampus (dbj|DB475396.2|), blast E-value=0, identity=96.61% | |
| 239-368, DB801567 full-length enriched swine cDNA library, adult skin Sus (dbj|DB801567.1|), blast E-value=0, identity=100% | |
| 250-368, 602350372F1 NIH_MGC_90 Homo sapiens cDNA clone IMAGE (gb|BG121787.1|), blast E-value=0, identity=96.64% | |
| 239-368, 602662219F1 NIH_MGC_21 Homo sapiens cDNA clone IMAGE (gb|BG774215.1|), blast E-value=0, identity=96.92% | |
| 239-368, PADT0811003_B11R porcine adipose tissue cDNA library (PADT) Sus (gb|EB412222.1|), blast E-value=0, identity=100% |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 239-368, BW975869 full-length enriched swine cDNA library, adult trachea Sus (dbj|BW975869.1|), blast E-value=0, identity=100% | |
| 251-368, DB475396 RIKEN full-length enriched human cDNA library, hippocampus (dbj|DB475396.2|), blast E-value=0, identity=96.61% | |
| 239-368, DB801567 full-length enriched swine cDNA library, adult skin Sus (dbj|DB801567.1|), blast E-value=0, identity=100% | |
| 250-368, 602350372F1 NIH_MGC_90 Homo sapiens cDNA clone IMAGE (gb|BG121787.1|), blast E-value=0, identity=96.64% | |
| 239-368, 602662219F1 NIH_MGC_21 Homo sapiens cDNA clone IMAGE (gb|BG774215.1|), blast E-value=0, identity=96.92% | |
| 239-368, PADT0811003_B11R porcine adipose tissue cDNA library (PADT) Sus (gb|EB412222.1|), blast E-value=0, identity=100% |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-133, gnl|bosTau2|chr29 (32012602-32012470) | |
| 1-133, gnl|canFam2|chr18 (57111915-57111376) | |
| 1-133, gnl|hg17|chr11 (62070485-62071037) | |
| 1-133, gnl|Hg17|chr11 (62070839-62070707) | |
| 1-133, gnl|loxAfr1|scaffold_63628 (2697-3271) | |
| 1-133, gnl|mm7|chr19 (8669814-8669269) | |
| 1-133, gnl|Mm7|chr19 (8669462-8669592) | |
| 1-133, gnl|monDom2|scaffold_150 (812209-812872) | |
| 1-133, gnl|oryCun1|scaffold_210230 (122448-121880) | |
| 1-133, gnl|panTro1|chr9_random (28779421-28779973) | |
| 1-133, gnl|rheMac2|chr14 (11546040-11545489) | |
| 1-133, gnl|rn3|chr1 (211821304-211820757) | |
| 239-368, gnl|bosTau2|chr29 (32002488-32002359) | |
| 239-368, gnl|canFam2|chr18 (57123721-57123514) | |
| 239-368, gnl|danRer3|chr14 (26473708-26473511) | |
| 239-368, gnl|dasNov1|scaffold_63186 (4260-4466) | |
| 239-368, gnl|echTel1|scaffold_212724 (5810-5603) | |
| 239-368, gnl|fr1|chrUn (128461092-128460901) | |
| 239-368, gnl|hg17|chr11 (62059977-62060180) | |
| 239-368, gnl|Hg17|chr11 (62060148-62060022) | |
| 239-368, gnl|loxAfr1|scaffold_151262 (74-282) | |
| 239-368, gnl|mm7|chr19 (8680436-8680230) | |
| 239-368, gnl|Mm7|chr19 (8680260-8680389) | |
| 239-368, gnl|monDom2|scaffold_150 (795698-795914) | |
| 239-368, gnl|oryCun1|scaffold_204834 (4655-4450) | |
| 239-368, gnl|panTro1|chr9 (63055515-63055722) | |
| 239-368, gnl|rheMac2|chr14 (11557162-11556958) | |
| 239-368, gnl|rn3|chr1 (211831949-211831743) | |
| 239-368, gnl|tetNig1|chrUn_random (100992269-100992097) | |
| 239-368, gnl|xenTro1|scaffold_1376 (167079-166912) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-133, gnl|bosTau2|chr29 (32012602-32012470) | |
| 1-133, gnl|canFam2|chr18 (57111915-57111376) | |
| 1-133, gnl|hg17|chr11 (62070485-62071037) | |
| 1-133, gnl|Hg17|chr11 (62070839-62070707) | |
| 1-133, gnl|loxAfr1|scaffold_63628 (2697-3271) | |
| 1-133, gnl|mm7|chr19 (8669814-8669269) | |
| 1-133, gnl|Mm7|chr19 (8669462-8669592) | |
| 1-133, gnl|monDom2|scaffold_150 (812209-812872) | |
| 1-133, gnl|oryCun1|scaffold_210230 (122448-121880) | |
| 1-133, gnl|panTro1|chr9_random (28779421-28779973) | |
| 1-133, gnl|rheMac2|chr14 (11546040-11545489) | |
| 1-133, gnl|rn3|chr1 (211821304-211820757) | |
| 239-368, gnl|bosTau2|chr29 (32002488-32002359) | |
| 239-368, gnl|canFam2|chr18 (57123721-57123514) | |
| 239-368, gnl|danRer3|chr14 (26473708-26473511) | |
| 239-368, gnl|dasNov1|scaffold_63186 (4260-4466) | |
| 239-368, gnl|echTel1|scaffold_212724 (5810-5603) | |
| 239-368, gnl|fr1|chrUn (128461092-128460901) | |
| 239-368, gnl|hg17|chr11 (62059977-62060180) | |
| 239-368, gnl|Hg17|chr11 (62060148-62060022) | |
| 239-368, gnl|loxAfr1|scaffold_151262 (74-282) | |
| 239-368, gnl|mm7|chr19 (8680436-8680230) | |
| 239-368, gnl|Mm7|chr19 (8680260-8680389) | |
| 239-368, gnl|monDom2|scaffold_150 (795698-795914) | |
| 239-368, gnl|oryCun1|scaffold_204834 (4655-4450) | |
| 239-368, gnl|panTro1|chr9 (63055515-63055722) | |
| 239-368, gnl|rheMac2|chr14 (11557162-11556958) | |
| 239-368, gnl|rn3|chr1 (211831949-211831743) | |
| 239-368, gnl|tetNig1|chrUn_random (100992269-100992097) | |
| 239-368, gnl|xenTro1|scaffold_1376 (167079-166912) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |