Non-Coding RNA Search

reep34c_c8.y1

Sequence:


               
               CAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCATCAGGAGACCGAAA
TCTCTGAGGAGTGAGCTCAGGAACTATCCTCTCCCCTCCCCCCACTCCCTACCCATCTCC
CATCTGAGAGAAAACCAGCGGAATGATCAAGAAGCTAACCTGCAATCGTCAGACTTCAGA
CTTTTAAGATGATTCTAAACCACCAGAAAATCAATTTCATTTTCTATTTGGAGTTTATAC
CAAGAGAGTCTTCTCTATATCCCTGATCCTTTTGAATACCTTTTTCTATATTGTGATACC
AGAAATTGTTCAACTTTTCACTCTATGGACTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGGAGCAGCACCCAGACATGTCAGTGACCAAGGTGGTCGTCCATCAGGAGACCGAAA
TCTCTGAGGAGTGAGCTCAGGAACTATCCTCTCCCCTCCCCCCACTCCCTACCCATCTCC
CATCTGAGAGAAAACCAGCGGAATGATCAAGAAGCTAACCTGCAATCGTCAGACTTCAGA
CTTTTAAGATGATTCTAAACCACCAGAAAATCAATTTCATTTTCTATTTGGAGTTTATAC
CAAGAGAGTCTTCTCTATATCCCTGATCCTTTTGAATACCTTTTTCTATATTGTGATACC
AGAAATTGTTCAACTTTTCACTCTATGGACTGT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               89-333, gnl|bosTau2|chr2 (77234383-77234133)
               

               
               89-333, gnl|canFam2|chr2 (74366682-74366302)
               

               
               89-333, gnl|dasNov1|scaffold_7957 (6965-6594)
               

               
               89-333, gnl|echTel1|scaffold_322768 (61698-62061)
               

               
               89-333, gnl|hg17|chr1 (29263931-29264307)
               

               
               89-333, gnl|Hg17|chr1 (29263961-29264188)
               

               
               89-333, gnl|loxAfr1|scaffold_922 (89345-88958)
               

               
               89-333, gnl|mm7|chr4 (131140369-131140023)
               

               
               89-333, gnl|Mm7|chr4 (131140337-131140132)
               

               
               89-333, gnl|monDom2|scaffold_147 (1789433-1789787)
               

               
               89-333, gnl|oryCun1|scaffold_198381 (4976-5341)
               

               
               89-333, gnl|panTro1|chr1 (29847554-29847930)
               

               
               89-333, gnl|rheMac2|chr1 (31857256-31857631)
               

               
               89-333, gnl|rn3|chr5 (150793021-150792675)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-333, gnl|bosTau2|chr2 (77234383-77234133)
               

               
               89-333, gnl|canFam2|chr2 (74366682-74366302)
               

               
               89-333, gnl|dasNov1|scaffold_7957 (6965-6594)
               

               
               89-333, gnl|echTel1|scaffold_322768 (61698-62061)
               

               
               89-333, gnl|hg17|chr1 (29263931-29264307)
               

               
               89-333, gnl|Hg17|chr1 (29263961-29264188)
               

               
               89-333, gnl|loxAfr1|scaffold_922 (89345-88958)
               

               
               89-333, gnl|mm7|chr4 (131140369-131140023)
               

               
               89-333, gnl|Mm7|chr4 (131140337-131140132)
               

               
               89-333, gnl|monDom2|scaffold_147 (1789433-1789787)
               

               
               89-333, gnl|oryCun1|scaffold_198381 (4976-5341)
               

               
               89-333, gnl|panTro1|chr1 (29847554-29847930)
               

               
               89-333, gnl|rheMac2|chr1 (31857256-31857631)
               

               
               89-333, gnl|rn3|chr5 (150793021-150792675)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	89-333, gnl\|bosTau2\|chr2 (77234383-77234133)
	89-333, gnl\|canFam2\|chr2 (74366682-74366302)
	89-333, gnl\|dasNov1\|scaffold_7957 (6965-6594)
	89-333, gnl\|echTel1\|scaffold_322768 (61698-62061)
	89-333, gnl\|hg17\|chr1 (29263931-29264307)
	89-333, gnl\|Hg17\|chr1 (29263961-29264188)
	89-333, gnl\|loxAfr1\|scaffold_922 (89345-88958)
	89-333, gnl\|mm7\|chr4 (131140369-131140023)
	89-333, gnl\|Mm7\|chr4 (131140337-131140132)
	89-333, gnl\|monDom2\|scaffold_147 (1789433-1789787)
	89-333, gnl\|oryCun1\|scaffold_198381 (4976-5341)
	89-333, gnl\|panTro1\|chr1 (29847554-29847930)
	89-333, gnl\|rheMac2\|chr1 (31857256-31857631)
	89-333, gnl\|rn3\|chr5 (150793021-150792675)