Non-Coding RNA Search

reep34c_g20.y1

Sequence:


               
               AAAAAGCAATTTGGAAGAGGAATTAGCTAAAAACAAGGTAGACATAAATGCATTAACCCA
CAACCTTCAGACTTTAGAGGAGAAGAATAAGCAACTGGCAGATCAAATGGCTTCCCTAGA
ACTTGAGCAAGCAACTTCAGATTACCATTGGCTTGCCCGACAGCAAGTGGAAAATGTCTT
GGGAAAAATTACGGAGAGTAAAAATAAACTGGCCTATGAAAAGGGGAAACTCCAGGTGAA
ATCTATTCTTGAAAAGAATGAAGAGGAGCTCTCACGAGCAGTGAAGGGTCGTGATGCAGC
CCTGAAAGAGAGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGCAATTTGGAAGAGGAATTAGCTAAAAACAAGGTAGACATAAATGCATTAACCCA
CAACCTTCAGACTTTAGAGGAGAAGAATAAGCAACTGGCAGATCAAATGGCTTCCCTAGA
ACTTGAGCAAGCAACTTCAGATTACCATTGGCTTGCCCGACAGCAAGTGGAAAATGTCTT
GGGAAAAATTACGGAGAGTAAAAATAAACTGGCCTATGAAAAGGGGAAACTCCAGGTGAA
ATCTATTCTTGAAAAGAATGAAGAGGAGCTCTCACGAGCAGTGAAGGGTCGTGATGCAGC
CCTGAAAGAGAGTCA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               35-151, gnl|bosTau2|chr2 (53488626-53488742)
               

               
               35-151, gnl|canFam2|chr37 (9301030-9301181)
               

               
               35-151, gnl|dasNov1|scaffold_30959 (12498-12346)
               

               
               35-151, gnl|echTel1|scaffold_158331 (5943-5792)
               

               
               35-151, gnl|hg17|chr2 (197385261-197385413)
               

               
               35-151, gnl|Hg17|chr2 (197385273-197385389)
               

               
               35-151, gnl|mm7|chr1 (54537549-54537699)
               

               
               35-151, gnl|Mm7|chr1 (54537559-54537675)
               

               
               35-151, gnl|oryCun1|scaffold_195902 (17587-17744)
               

               
               35-151, gnl|panTro1|chr13 (87326639-87326791)
               

               
               35-151, gnl|rheMac2|chr12 (60326337-60326489)
               

               
               35-151, gnl|rn3|chr9 (53120749-53120899)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-151, gnl|bosTau2|chr2 (53488626-53488742)
               

               
               35-151, gnl|canFam2|chr37 (9301030-9301181)
               

               
               35-151, gnl|dasNov1|scaffold_30959 (12498-12346)
               

               
               35-151, gnl|echTel1|scaffold_158331 (5943-5792)
               

               
               35-151, gnl|hg17|chr2 (197385261-197385413)
               

               
               35-151, gnl|Hg17|chr2 (197385273-197385389)
               

               
               35-151, gnl|mm7|chr1 (54537549-54537699)
               

               
               35-151, gnl|Mm7|chr1 (54537559-54537675)
               

               
               35-151, gnl|oryCun1|scaffold_195902 (17587-17744)
               

               
               35-151, gnl|panTro1|chr13 (87326639-87326791)
               

               
               35-151, gnl|rheMac2|chr12 (60326337-60326489)
               

               
               35-151, gnl|rn3|chr9 (53120749-53120899)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	35-151, gnl\|bosTau2\|chr2 (53488626-53488742)
	35-151, gnl\|canFam2\|chr37 (9301030-9301181)
	35-151, gnl\|dasNov1\|scaffold_30959 (12498-12346)
	35-151, gnl\|echTel1\|scaffold_158331 (5943-5792)
	35-151, gnl\|hg17\|chr2 (197385261-197385413)
	35-151, gnl\|Hg17\|chr2 (197385273-197385389)
	35-151, gnl\|mm7\|chr1 (54537549-54537699)
	35-151, gnl\|Mm7\|chr1 (54537559-54537675)
	35-151, gnl\|oryCun1\|scaffold_195902 (17587-17744)
	35-151, gnl\|panTro1\|chr13 (87326639-87326791)
	35-151, gnl\|rheMac2\|chr12 (60326337-60326489)
	35-151, gnl\|rn3\|chr9 (53120749-53120899)