Non-Coding RNA Search

reep34c_o24.y1

Sequence:


               
               TTTGGACTTGCCTGGCAGGTAAGCCGATGTCAAAATAGCAAGGAGGGGCCTGGATGAAAT
CTCATCAGCCTCCAGGTAAGGGGTTCAGTTTGCAGACTTGGTGCCGTGAAGATTGCTCAT
GTGAACAGAGAAGGAGGAGGAGAAGGAGGAGGAGGAGACAGAGAAGATGCTCCAGAGATT
GGGGGTCAGCCAGAGTCCCTCCTGGGTAGTCACCAGCCAGTGGGAAACTTATGGGGAAAG
AGGTAGCAGAggagttccctttgtgactcagtgggttaagaacccgactagtgtccctga
ggattcaggttgatccctggcttcactcagtgggttaaaggatatggtgttgccacaagc
tgaggtataggtcagcagctgcagctctgattcagcttttagcctgggaacttccatatg
ccacaggtatggcccTAAAAAAGGGGGAAAAATAATAAATAAATAAATAAATAAAAAGAG
GTAGCACAGCTAGGGCTAGAGGTTGGTCTGAACCGGTGGAGGTTCATGCAGATGCCTAAG
CCATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGGACTTGCCTGGCAGGTAAGCCGATGTCAAAATAGCAAGGAGGGGCCTGGATGAAAT
CTCATCAGCCTCCAGGTAAGGGGTTCAGTTTGCAGACTTGGTGCCGTGAAGATTGCTCAT
GTGAACAGAGAAGGAGGAGGAGAAGGAGGAGGAGGAGACAGAGAAGATGCTCCAGAGATT
GGGGGTCAGCCAGAGTCCCTCCTGGGTAGTCACCAGCCAGTGGGAAACTTATGGGGAAAG
AGGTAGCAGAggagttccctttgtgactcagtgggttaagaacccgactagtgtccctga
ggattcaggttgatccctggcttcactcagtgggttaaaggatatggtgttgccacaagc
tgaggtataggtcagcagctgcagctctgattcagcttttagcctgggaacttccatatg
ccacaggtatggcccTAAAAAAGGGGGAAAAATAATAAATAAATAAATAAATAAAAAGAG
GTAGCACAGCTAGGGCTAGAGGTTGGTCTGAACCGGTGGAGGTTCATGCAGATGCCTAAG
CCATCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               120-251, - strand, RNAz p=0.999993

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-251, - strand, RNAz p=0.999993

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-251, gnl|bosTau2|chr10 (23060349-23060577)
               

               
               5-251, gnl|Hg17|chr15 (39651268-39651832)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-251, gnl|bosTau2|chr10 (23060349-23060577)
               

               
               5-251, gnl|Hg17|chr15 (39651268-39651832)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	5-251, gnl\|bosTau2\|chr10 (23060349-23060577)
	5-251, gnl\|Hg17\|chr15 (39651268-39651832)