reep35c_a7.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAAGTACCTGCCAATGAGAATATAAAAGGTTACTACATAATAATTGTGCCTTTGAAGAA ATCTCGTGGGAAATTTATCAAGCCATGGGAGAGTCCAGATGAAATGGAATTAGATGAGCT GCTTAAAGAGATATCTAGGAAACGCAGAAGCATCCGTTATGGGAGAGAAGTTGAATTAAA GCCATATATCGCCGCTCACTTTGATGTCCTTCCCACTGAGTTCACCCTGGGGGATGACAA ACATTATGGTGGATTTACAAACAAGCAGCTCCAAAGTGGACAAGAGTATGTCTTCTTTGT ACTGGCAGTGATGGAACACGCAGAGTCCAAGATGTATGCAACCAGCCCTTACTCGGACCC CGTTGTGTCGATGGATCTGGATCCACAGCCAATCACAGATGAAGAAGAAGGCTTGATCTG GGTTGTAGGTCCTGTCCTTGCGGTGGTCTTTATCATCTGCATTGTCATAGCTATTCTTCT TTATAAAAGGAAGAGGGCAGAGTCCGACTCTAGAAAGAGCAGCATACCAAACAGTAAGGA GGTCCCTTCACACCATCCAACAGACCCAGTAGAACTGAGACGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAAGTACCTGCCAATGAGAATATAAAAGGTTACTACATAATAATTGTGCCTTTGAAGAA ATCTCGTGGGAAATTTATCAAGCCATGGGAGAGTCCAGATGAAATGGAATTAGATGAGCT GCTTAAAGAGATATCTAGGAAACGCAGAAGCATCCGTTATGGGAGAGAAGTTGAATTAAA GCCATATATCGCCGCTCACTTTGATGTCCTTCCCACTGAGTTCACCCTGGGGGATGACAA ACATTATGGTGGATTTACAAACAAGCAGCTCCAAAGTGGACAAGAGTATGTCTTCTTTGT ACTGGCAGTGATGGAACACGCAGAGTCCAAGATGTATGCAACCAGCCCTTACTCGGACCC CGTTGTGTCGATGGATCTGGATCCACAGCCAATCACAGATGAAGAAGAAGGCTTGATCTG GGTTGTAGGTCCTGTCCTTGCGGTGGTCTTTATCATCTGCATTGTCATAGCTATTCTTCT TTATAAAAGGAAGAGGGCAGAGTCCGACTCTAGAAAGAGCAGCATACCAAACAGTAAGGA GGTCCCTTCACACCATCCAACAGACCCAGTAGAACTGAGACGC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 368-487, + strand, RNAz p=0.589747 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 368-487, + strand, RNAz p=0.589747 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 117-327, gnl|bosTau2|chr8 (16023108-16023318) | |
| 117-327, gnl|Hg17|chr9 (8455677-8455467) | |
| 117-327, gnl|Mm7|chr4 (75470103-75469893) | |
| 329-493, gnl|bosTau2|chr8 (16034156-16034320) | |
| 329-493, gnl|canFam2|chr11 (32260404-32260588) | |
| 329-493, gnl|danRer3|chr6 (21465880-21465711) | |
| 329-493, gnl|dasNov1|scaffold_881 (162009-161825) | |
| 329-493, gnl|echTel1|scaffold_315090 (49320-49136) | |
| 329-493, gnl|fr1|chrUn (136268364-136268550) | |
| 329-493, gnl|hg17|chr9 (8450404-8450588) | |
| 329-493, gnl|Hg17|chr9 (8450571-8450407) | |
| 329-493, gnl|loxAfr1|scaffold_174376 (4685-4501) | |
| 329-493, gnl|mm7|chr4 (75463386-75463570) | |
| 329-493, gnl|Mm7|chr4 (75463553-75463389) | |
| 329-493, gnl|monDom2|scaffold_5 (107898754-107898572) | |
| 329-493, gnl|oryCun1|scaffold_210064 (287626-287442) | |
| 329-493, gnl|panTro1|chr11 (8385044-8385228) | |
| 329-493, gnl|rheMac2|chr15 (68682803-68682619) | |
| 329-493, gnl|rn3|chr5 (94170016-94169832) | |
| 329-493, gnl|tetNig1|chrUn_random (56449955-56449784) | |
| 329-493, gnl|xenTro1|scaffold_52 (1308193-1308011) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 117-327, gnl|bosTau2|chr8 (16023108-16023318) | |
| 117-327, gnl|Hg17|chr9 (8455677-8455467) | |
| 117-327, gnl|Mm7|chr4 (75470103-75469893) | |
| 329-493, gnl|bosTau2|chr8 (16034156-16034320) | |
| 329-493, gnl|canFam2|chr11 (32260404-32260588) | |
| 329-493, gnl|danRer3|chr6 (21465880-21465711) | |
| 329-493, gnl|dasNov1|scaffold_881 (162009-161825) | |
| 329-493, gnl|echTel1|scaffold_315090 (49320-49136) | |
| 329-493, gnl|fr1|chrUn (136268364-136268550) | |
| 329-493, gnl|hg17|chr9 (8450404-8450588) | |
| 329-493, gnl|Hg17|chr9 (8450571-8450407) | |
| 329-493, gnl|loxAfr1|scaffold_174376 (4685-4501) | |
| 329-493, gnl|mm7|chr4 (75463386-75463570) | |
| 329-493, gnl|Mm7|chr4 (75463553-75463389) | |
| 329-493, gnl|monDom2|scaffold_5 (107898754-107898572) | |
| 329-493, gnl|oryCun1|scaffold_210064 (287626-287442) | |
| 329-493, gnl|panTro1|chr11 (8385044-8385228) | |
| 329-493, gnl|rheMac2|chr15 (68682803-68682619) | |
| 329-493, gnl|rn3|chr5 (94170016-94169832) | |
| 329-493, gnl|tetNig1|chrUn_random (56449955-56449784) | |
| 329-493, gnl|xenTro1|scaffold_52 (1308193-1308011) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |