Non-Coding RNA Search

reje01b_h8.y1

Sequence:


               
               GGAGCCAGGACTTGCTCCTGCAGGTCCGCGATGGCTGGCTCCAGCTGCTGGACATCGAGA
CCAAGGAGGAGCTGGAGTCTTACCGCCTGGACAGCATCAAGGTCATGGATGTGGCACTTG
ACACCTGCTCCTACAACTCTGTCCTGTCCATCACAGTGCAGGATTCGGGCCTGCGAGACG
TTAGCACCCTGCTCTTCCAGTGCCCGGAAGTGGGGGCAGAGCGACTGAAGACCAGCCTGC
AGAAGGCTCTGGAAGAGGACTTAGAGCAAAGACCCCGATTTGGAGCCCTCCACCCAGACC
AGGACAGATGGAGGGGGCCTCCCCTGGAAAGGCCACTCCCTAAGGAGCAAGCACCCCCTT
TTGAGCGGGGACCCCCTCCAGAACAGCCCCACTGGATGGCCCCAGAGCAGAACACACCAC
CGTCCCCAAGGCCCCTGCCGCACCCCTCCAGCGTCCACGAGCGGAGCGCCTTCACTCTGC
CTCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCCAGGACTTGCTCCTGCAGGTCCGCGATGGCTGGCTCCAGCTGCTGGACATCGAGA
CCAAGGAGGAGCTGGAGTCTTACCGCCTGGACAGCATCAAGGTCATGGATGTGGCACTTG
ACACCTGCTCCTACAACTCTGTCCTGTCCATCACAGTGCAGGATTCGGGCCTGCGAGACG
TTAGCACCCTGCTCTTCCAGTGCCCGGAAGTGGGGGCAGAGCGACTGAAGACCAGCCTGC
AGAAGGCTCTGGAAGAGGACTTAGAGCAAAGACCCCGATTTGGAGCCCTCCACCCAGACC
AGGACAGATGGAGGGGGCCTCCCCTGGAAAGGCCACTCCCTAAGGAGCAAGCACCCCCTT
TTGAGCGGGGACCCCCTCCAGAACAGCCCCACTGGATGGCCCCAGAGCAGAACACACCAC
CGTCCCCAAGGCCCCTGCCGCACCCCTCCAGCGTCCACGAGCGGAGCGCCTTCACTCTGC
CTCCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               270-409, - strand, RNAz p=0.997751

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-409, - strand, RNAz p=0.997751

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               309-380, + strand, RNAmicro p=0.999984
               

               
               317-408, - strand, RNAmicro p=0.999189

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               309-380, + strand, RNAmicro p=0.999984
               

               
               317-408, - strand, RNAmicro p=0.999189

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               61-216, gnl|bosTau2|chr3 (25656972-25657127)
               

               
               61-216, gnl|canFam2|chr6 (45229097-45228937)
               

               
               61-216, gnl|echTel1|scaffold_300741 (3543-3384)
               

               
               61-216, gnl|hg17|chr1 (110013895-110014055)
               

               
               61-216, gnl|Hg17|chr1 (110014056-110013901)
               

               
               61-216, gnl|loxAfr1|scaffold_75103 (3271-3431)
               

               
               61-216, gnl|mm7|chr3 (107699962-107699802)
               

               
               61-216, gnl|Mm7|chr3 (107699799-107699954)
               

               
               61-216, gnl|monDom2|scaffold_0 (6830530-6830370)
               

               
               61-216, gnl|oryCun1|scaffold_163854 (674-515)
               

               
               61-216, gnl|panTro1|chr1_random (4881337-4881177)
               

               
               61-216, gnl|rheMac2|chr1 (112817381-112817541)
               

               
               61-216, gnl|rn3|chr2 (203406185-203406025)
               

               
               61-216, gnl|tetNig1|chr9 (2866779-2866619)
               


               
               270-409, gnl|bosTau2|chr3 (25657759-25657898)
               

               
               270-409, gnl|Hg17|chr1 (110013329-110013190)
               

               
               270-409, gnl|Mm7|chr3 (107701643-107701800)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-216, gnl|bosTau2|chr3 (25656972-25657127)
               

               
               61-216, gnl|canFam2|chr6 (45229097-45228937)
               

               
               61-216, gnl|echTel1|scaffold_300741 (3543-3384)
               

               
               61-216, gnl|hg17|chr1 (110013895-110014055)
               

               
               61-216, gnl|Hg17|chr1 (110014056-110013901)
               

               
               61-216, gnl|loxAfr1|scaffold_75103 (3271-3431)
               

               
               61-216, gnl|mm7|chr3 (107699962-107699802)
               

               
               61-216, gnl|Mm7|chr3 (107699799-107699954)
               

               
               61-216, gnl|monDom2|scaffold_0 (6830530-6830370)
               

               
               61-216, gnl|oryCun1|scaffold_163854 (674-515)
               

               
               61-216, gnl|panTro1|chr1_random (4881337-4881177)
               

               
               61-216, gnl|rheMac2|chr1 (112817381-112817541)
               

               
               61-216, gnl|rn3|chr2 (203406185-203406025)
               

               
               61-216, gnl|tetNig1|chr9 (2866779-2866619)
               


               
               270-409, gnl|bosTau2|chr3 (25657759-25657898)
               

               
               270-409, gnl|Hg17|chr1 (110013329-110013190)
               

               
               270-409, gnl|Mm7|chr3 (107701643-107701800)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	309-380, + strand, RNAmicro p=0.999984
	317-408, - strand, RNAmicro p=0.999189

	61-216, gnl\|bosTau2\|chr3 (25656972-25657127)
	61-216, gnl\|canFam2\|chr6 (45229097-45228937)
	61-216, gnl\|echTel1\|scaffold_300741 (3543-3384)
	61-216, gnl\|hg17\|chr1 (110013895-110014055)
	61-216, gnl\|Hg17\|chr1 (110014056-110013901)
	61-216, gnl\|loxAfr1\|scaffold_75103 (3271-3431)
	61-216, gnl\|mm7\|chr3 (107699962-107699802)
	61-216, gnl\|Mm7\|chr3 (107699799-107699954)
	61-216, gnl\|monDom2\|scaffold_0 (6830530-6830370)
	61-216, gnl\|oryCun1\|scaffold_163854 (674-515)
	61-216, gnl\|panTro1\|chr1_random (4881337-4881177)
	61-216, gnl\|rheMac2\|chr1 (112817381-112817541)
	61-216, gnl\|rn3\|chr2 (203406185-203406025)
	61-216, gnl\|tetNig1\|chr9 (2866779-2866619)

	270-409, gnl\|bosTau2\|chr3 (25657759-25657898)
	270-409, gnl\|Hg17\|chr1 (110013329-110013190)
	270-409, gnl\|Mm7\|chr3 (107701643-107701800)