Non-Coding RNA Search

reje07b_f8.y1

Sequence:


               
               TGGTTTATCTTATGAGATGATCGGACAAAAAGGATCAGACACTTCAAAATTGGAAATGTT
TTTCTCAGGGTATCCTCGTATAGTTGGATTATCATTATTTCCTAATTTAACAAGCCTCAC
AATTGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTTTATCTTATGAGATGATCGGACAAAAAGGATCAGACACTTCAAAATTGGAAATGTT
TTTCTCAGGGTATCCTCGTATAGTTGGATTATCATTATTTCCTAATTTAACAAGCCTCAC
AATTGTTG

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-128, gnl|bosTau2|chr14 (17702388-17702261)
               

               
               1-128, gnl|canFam2|chr8 (38100458-38100597)
               

               
               1-128, gnl|danRer3|chr13 (32524005-32524139)
               

               
               1-128, gnl|dasNov1|scaffold_156220 (39347-39206)
               

               
               1-128, gnl|echTel1|scaffold_209000 (3988-4130)
               

               
               1-128, gnl|galGal2|chr5 (51396743-51396610)
               

               
               1-128, gnl|hg17|chr14 (59464721-59464861)
               

               
               1-128, gnl|Hg17|chr14 (59464750-59464877)
               

               
               1-128, gnl|loxAfr1|scaffold_12803 (40780-40638)
               

               
               1-128, gnl|mm7|chr12 (70400174-70400314)
               

               
               1-128, gnl|Mm7|chr12 (70400203-70400330)
               

               
               1-128, gnl|monDom2|scaffold_8 (72354205-72354344)
               

               
               1-128, gnl|oryCun1|scaffold_208996 (106465-106325)
               

               
               1-128, gnl|panTro1|chr15 (59035799-59035939)
               

               
               1-128, gnl|rheMac2|chr7 (122942877-122943017)
               

               
               1-128, gnl|rn3|chr6 (94741234-94741374)
               

               
               1-128, gnl|tetNig1|chr10 (5533836-5533972)
               

               
               1-128, gnl|xenTro1|scaffold_33 (539634-539494)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-128, gnl|bosTau2|chr14 (17702388-17702261)
               

               
               1-128, gnl|canFam2|chr8 (38100458-38100597)
               

               
               1-128, gnl|danRer3|chr13 (32524005-32524139)
               

               
               1-128, gnl|dasNov1|scaffold_156220 (39347-39206)
               

               
               1-128, gnl|echTel1|scaffold_209000 (3988-4130)
               

               
               1-128, gnl|galGal2|chr5 (51396743-51396610)
               

               
               1-128, gnl|hg17|chr14 (59464721-59464861)
               

               
               1-128, gnl|Hg17|chr14 (59464750-59464877)
               

               
               1-128, gnl|loxAfr1|scaffold_12803 (40780-40638)
               

               
               1-128, gnl|mm7|chr12 (70400174-70400314)
               

               
               1-128, gnl|Mm7|chr12 (70400203-70400330)
               

               
               1-128, gnl|monDom2|scaffold_8 (72354205-72354344)
               

               
               1-128, gnl|oryCun1|scaffold_208996 (106465-106325)
               

               
               1-128, gnl|panTro1|chr15 (59035799-59035939)
               

               
               1-128, gnl|rheMac2|chr7 (122942877-122943017)
               

               
               1-128, gnl|rn3|chr6 (94741234-94741374)
               

               
               1-128, gnl|tetNig1|chr10 (5533836-5533972)
               

               
               1-128, gnl|xenTro1|scaffold_33 (539634-539494)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	1-128, gnl\|bosTau2\|chr14 (17702388-17702261)
	1-128, gnl\|canFam2\|chr8 (38100458-38100597)
	1-128, gnl\|danRer3\|chr13 (32524005-32524139)
	1-128, gnl\|dasNov1\|scaffold_156220 (39347-39206)
	1-128, gnl\|echTel1\|scaffold_209000 (3988-4130)
	1-128, gnl\|galGal2\|chr5 (51396743-51396610)
	1-128, gnl\|hg17\|chr14 (59464721-59464861)
	1-128, gnl\|Hg17\|chr14 (59464750-59464877)
	1-128, gnl\|loxAfr1\|scaffold_12803 (40780-40638)
	1-128, gnl\|mm7\|chr12 (70400174-70400314)
	1-128, gnl\|Mm7\|chr12 (70400203-70400330)
	1-128, gnl\|monDom2\|scaffold_8 (72354205-72354344)
	1-128, gnl\|oryCun1\|scaffold_208996 (106465-106325)
	1-128, gnl\|panTro1\|chr15 (59035799-59035939)
	1-128, gnl\|rheMac2\|chr7 (122942877-122943017)
	1-128, gnl\|rn3\|chr6 (94741234-94741374)
	1-128, gnl\|tetNig1\|chr10 (5533836-5533972)
	1-128, gnl\|xenTro1\|scaffold_33 (539634-539494)