Non-Coding RNA Search

reje08b_o3.y1

Sequence:


               
               AGGTGAGTGACACAACCTCTCTTGTTTCCTGTAAAGGAGCAGTGCCGCACTGGACTCCCA
GGCCCATGGGCACCAGTCACAGGGAGTGGGCCTGTACCAGTGGGGTCCCAGTCCAGGGGG
CGGCTGAGGTGGGACGGTTTTGACAAACACCTCAAAGAGAAACCTCAGCAGGCTTTGCAC
AGCTCACTTGGAGAAAAATCGGAGCTTCTCCCTTTCTCACCAATTTGTGGATTTGTGACA
ATTTAATGCTACCAGGCCCAAGAACCCCCCTGCTGCAGTGCCAGGGCCTTGCAGACTGCT
GTTTGGGCAGCTAAGCAACTTTGCAGGGCACTGTGAGAACCCAGAATGCCAGGCAGTGAC
CCTGCACACCCCATATGCCACAGCCTGTGGCCAGCAGAAACCAGACCCACCTTCCTGGAC
GGAGGGGGCTGGTCCCCAGGCCCCGCTGGGACTGACAAGCAGCACCTGGTACATGCTGAC
TCACCCTCCAGGTCAGGACTGCAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGAGTGACACAACCTCTCTTGTTTCCTGTAAAGGAGCAGTGCCGCACTGGACTCCCA
GGCCCATGGGCACCAGTCACAGGGAGTGGGCCTGTACCAGTGGGGTCCCAGTCCAGGGGG
CGGCTGAGGTGGGACGGTTTTGACAAACACCTCAAAGAGAAACCTCAGCAGGCTTTGCAC
AGCTCACTTGGAGAAAAATCGGAGCTTCTCCCTTTCTCACCAATTTGTGGATTTGTGACA
ATTTAATGCTACCAGGCCCAAGAACCCCCCTGCTGCAGTGCCAGGGCCTTGCAGACTGCT
GTTTGGGCAGCTAAGCAACTTTGCAGGGCACTGTGAGAACCCAGAATGCCAGGCAGTGAC
CCTGCACACCCCATATGCCACAGCCTGTGGCCAGCAGAAACCAGACCCACCTTCCTGGAC
GGAGGGGGCTGGTCCCCAGGCCCCGCTGGGACTGACAAGCAGCACCTGGTACATGCTGAC
TCACCCTCCAGGTCAGGACTGCAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               142-481, - strand, RNAz p=0.988232

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-481, - strand, RNAz p=0.988232

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               2-497, gnl|bosTau2|chr11 (85449466-85448981)
               

               
               2-497, gnl|canFam2|chr9 (51762232-51761840)
               

               
               2-497, gnl|dasNov1|scaffold_181674 (4524-4176)
               

               
               2-497, gnl|hg17|chr9 (137408781-137409185)
               

               
               2-497, gnl|loxAfr1|scaffold_35025 (13366-12974)
               

               
               2-497, gnl|panTro1|chrUn_random (14363761-14363355)
               

               
               2-497, gnl|rheMac2|chr15 (1004398-1003998)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-497, gnl|bosTau2|chr11 (85449466-85448981)
               

               
               2-497, gnl|canFam2|chr9 (51762232-51761840)
               

               
               2-497, gnl|dasNov1|scaffold_181674 (4524-4176)
               

               
               2-497, gnl|hg17|chr9 (137408781-137409185)
               

               
               2-497, gnl|loxAfr1|scaffold_35025 (13366-12974)
               

               
               2-497, gnl|panTro1|chrUn_random (14363761-14363355)
               

               
               2-497, gnl|rheMac2|chr15 (1004398-1003998)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	2-497, gnl\|bosTau2\|chr11 (85449466-85448981)
	2-497, gnl\|canFam2\|chr9 (51762232-51761840)
	2-497, gnl\|dasNov1\|scaffold_181674 (4524-4176)
	2-497, gnl\|hg17\|chr9 (137408781-137409185)
	2-497, gnl\|loxAfr1\|scaffold_35025 (13366-12974)
	2-497, gnl\|panTro1\|chrUn_random (14363761-14363355)
	2-497, gnl\|rheMac2\|chr15 (1004398-1003998)