reje11b_n2.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGCAGGAATCGGCAGAGGGGAGGGGAGGTCTGGGCCGGTCCCGGCGACTCCAGCGCCT CTGGTCCGCGACCTGTCCTTGGAGCCATGGGTGTGATAGGTATACAGCTGGTTGTTACCA TGGTGATGGCCAGTGTCATGCAGAAGATTATACCTCACTATTCTCTTGCTCGCTGGCTAC TCTGTAATGGCAGTTTGAGATGGTATCAACATCCTACAGAAGAGGAATTAAGAATTCTTT CAGGAAAGCAGCAAAAAGGGAAAAGCAAAAAAGATAGGAAATATAATGGTCACATTGAAA GTAAGCCACTAACCATTCCAAAGGATATTGATCTCCATCTAGAAACAAAGTCAGTTACAG AACTGGATACTTTAGCATTGCATTACTTTCCAGAATACCAGTGGCTGGTGGATTTCACAG TGGCTGCTACAGTTGTTTATCTAGTAACTGAAGTTTACTACAATTTTATGAAGCCCACAC AGGAAATGAATATCAGCTTAGTATGGTGCCTACTTGTTTTGTCTTTTGCAATCAAAGTTC TGTTTTCATTAACTACACACTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGCAGGAATCGGCAGAGGGGAGGGGAGGTCTGGGCCGGTCCCGGCGACTCCAGCGCCT CTGGTCCGCGACCTGTCCTTGGAGCCATGGGTGTGATAGGTATACAGCTGGTTGTTACCA TGGTGATGGCCAGTGTCATGCAGAAGATTATACCTCACTATTCTCTTGCTCGCTGGCTAC TCTGTAATGGCAGTTTGAGATGGTATCAACATCCTACAGAAGAGGAATTAAGAATTCTTT CAGGAAAGCAGCAAAAAGGGAAAAGCAAAAAAGATAGGAAATATAATGGTCACATTGAAA GTAAGCCACTAACCATTCCAAAGGATATTGATCTCCATCTAGAAACAAAGTCAGTTACAG AACTGGATACTTTAGCATTGCATTACTTTCCAGAATACCAGTGGCTGGTGGATTTCACAG TGGCTGCTACAGTTGTTTATCTAGTAACTGAAGTTTACTACAATTTTATGAAGCCCACAC AGGAAATGAATATCAGCTTAGTATGGTGCCTACTTGTTTTGTCTTTTGCAATCAAAGTTC TGTTTTCATTAACTACACACTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 89-193, + strand, RNAz p=0.856251 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 89-193, + strand, RNAz p=0.856251 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 89-193, gnl|bosTau2|chr7 (57065960-57065856) | |
| 89-193, gnl|canFam2|chr3 (23240888-23240955) | |
| 89-193, gnl|canFam2|chr3 (23241016-23240869) | |
| 89-193, gnl|danRer3|chr5 (18802821-18802888) | |
| 89-193, gnl|danRer3|chr5 (18802957-18802801) | |
| 89-193, gnl|dasNov1|scaffold_75095 (8711-8784) | |
| 89-193, gnl|dasNov1|scaffold_75095 (8845-8692) | |
| 89-193, gnl|echTel1|scaffold_86818 (5271-5343) | |
| 89-193, gnl|echTel1|scaffold_86818 (5403-5252) | |
| 89-193, gnl|fr1|chrUn (238209614-238209681) | |
| 89-193, gnl|fr1|chrUn (238209724-238209591) | |
| 89-193, gnl|galGal2|chrUn (8459344-8459277) | |
| 89-193, gnl|galGal2|chrUn (8459233-8459360) | |
| 89-193, gnl|hg17|chr10 (37666330-37666417) | |
| 89-193, gnl|hg17|chr5 (87572361-87572512) | |
| 89-193, gnl|Hg17|chr5 (87572490-87572386) | |
| 89-193, gnl|loxAfr1|scaffold_182825 (1050-1168) | |
| 89-193, gnl|mm7|chr13 (81320990-81321057) | |
| 89-193, gnl|mm7|chr13 (81321118-81320964) | |
| 89-193, gnl|Mm7|chr13 (81320987-81321091) | |
| 89-193, gnl|monDom2|scaffold_20 (12411197-12411048) | |
| 89-193, gnl|oryCun1|scaffold_200271 (1508-1591) | |
| 89-193, gnl|oryCun1|scaffold_200271 (1652-1498) | |
| 89-193, gnl|panTro1|chr4 (27669386-27669235) | |
| 89-193, gnl|panTro1|chr8 (38291193-38291280) | |
| 89-193, gnl|rheMac2|chr6 (84521910-84521837) | |
| 89-193, gnl|rheMac2|chr6 (84521776-84521927) | |
| 89-193, gnl|rn3|chr14 (89850790-89850857) | |
| 89-193, gnl|rn3|chr2 (13432615-13432769) | |
| 89-193, gnl|xenTro1|scaffold_362 (467285-467196) | |
| 89-193, gnl|xenTro1|scaffold_362 (467133-467286) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 89-193, gnl|bosTau2|chr7 (57065960-57065856) | |
| 89-193, gnl|canFam2|chr3 (23240888-23240955) | |
| 89-193, gnl|canFam2|chr3 (23241016-23240869) | |
| 89-193, gnl|danRer3|chr5 (18802821-18802888) | |
| 89-193, gnl|danRer3|chr5 (18802957-18802801) | |
| 89-193, gnl|dasNov1|scaffold_75095 (8711-8784) | |
| 89-193, gnl|dasNov1|scaffold_75095 (8845-8692) | |
| 89-193, gnl|echTel1|scaffold_86818 (5271-5343) | |
| 89-193, gnl|echTel1|scaffold_86818 (5403-5252) | |
| 89-193, gnl|fr1|chrUn (238209614-238209681) | |
| 89-193, gnl|fr1|chrUn (238209724-238209591) | |
| 89-193, gnl|galGal2|chrUn (8459344-8459277) | |
| 89-193, gnl|galGal2|chrUn (8459233-8459360) | |
| 89-193, gnl|hg17|chr10 (37666330-37666417) | |
| 89-193, gnl|hg17|chr5 (87572361-87572512) | |
| 89-193, gnl|Hg17|chr5 (87572490-87572386) | |
| 89-193, gnl|loxAfr1|scaffold_182825 (1050-1168) | |
| 89-193, gnl|mm7|chr13 (81320990-81321057) | |
| 89-193, gnl|mm7|chr13 (81321118-81320964) | |
| 89-193, gnl|Mm7|chr13 (81320987-81321091) | |
| 89-193, gnl|monDom2|scaffold_20 (12411197-12411048) | |
| 89-193, gnl|oryCun1|scaffold_200271 (1508-1591) | |
| 89-193, gnl|oryCun1|scaffold_200271 (1652-1498) | |
| 89-193, gnl|panTro1|chr4 (27669386-27669235) | |
| 89-193, gnl|panTro1|chr8 (38291193-38291280) | |
| 89-193, gnl|rheMac2|chr6 (84521910-84521837) | |
| 89-193, gnl|rheMac2|chr6 (84521776-84521927) | |
| 89-193, gnl|rn3|chr14 (89850790-89850857) | |
| 89-193, gnl|rn3|chr2 (13432615-13432769) | |
| 89-193, gnl|xenTro1|scaffold_362 (467285-467196) | |
| 89-193, gnl|xenTro1|scaffold_362 (467133-467286) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eje (0.0988338) |