Non-Coding RNA Search

reje12b_c12.y1

Sequence:


               
               CCGACTCAGAGGCTGAGACCCACCTGTCAGCAGTGGCATAGAGGGGATCTCTCTGAGGTC
CTTCCTACTCCAGAGTTAGAGAGTTTCGCAAAGTCCCTCTGGTCAGAGGGGATCAGAGGC
CCCAGACCAGTGAAACCTACAGAGCAAAGATTGAACCAGTTGGTTGGACCTTCACAAATT
TAGAACTTCTTTATGTTGGCACTTAATAGTCTTATATCTCAAATGATAAATCAGATTTAA
CATGAGCATATCAGTCAGGTCTTCGTAGTGTAAGTCGGACCTTTCTAAATTCCGCAGACA
TTACCTGCAGGGCTTTCTCAGGAATTCCTAGGTGAGCAGACATGATCCTTGCCGTCTTGG
ACCCCTCGTCTCCTTGGGGCATTTTCTTTCCTTTGGGATAAGCTTGATCTAGGCCTGCCT
GGCACGGAAAATGCAGATATCTGTAGCCTTCCTTCAGACTTGATAGCAGAATCGCTTTAA
ATTGCTCAGCCCTCCCTCCTCAGTGGTGGAGGTGCTCACGGGCAGGTGACTGGGTGGAAG
GAGCAGGAGAAACAGAAAAACCAGATAATCTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGACTCAGAGGCTGAGACCCACCTGTCAGCAGTGGCATAGAGGGGATCTCTCTGAGGTC
CTTCCTACTCCAGAGTTAGAGAGTTTCGCAAAGTCCCTCTGGTCAGAGGGGATCAGAGGC
CCCAGACCAGTGAAACCTACAGAGCAAAGATTGAACCAGTTGGTTGGACCTTCACAAATT
TAGAACTTCTTTATGTTGGCACTTAATAGTCTTATATCTCAAATGATAAATCAGATTTAA
CATGAGCATATCAGTCAGGTCTTCGTAGTGTAAGTCGGACCTTTCTAAATTCCGCAGACA
TTACCTGCAGGGCTTTCTCAGGAATTCCTAGGTGAGCAGACATGATCCTTGCCGTCTTGG
ACCCCTCGTCTCCTTGGGGCATTTTCTTTCCTTTGGGATAAGCTTGATCTAGGCCTGCCT
GGCACGGAAAATGCAGATATCTGTAGCCTTCCTTCAGACTTGATAGCAGAATCGCTTTAA
ATTGCTCAGCCCTCCCTCCTCAGTGGTGGAGGTGCTCACGGGCAGGTGACTGGGTGGAAG
GAGCAGGAGAAACAGAAAAACCAGATAATCTAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               457-568, - strand, RNAz p=0.560207

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               457-568, - strand, RNAz p=0.560207

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               277-568, gnl|bosTau2|chr3 (15242574-15242877)
               

               
               277-568, gnl|canFam2|chr17 (63701043-63701255)
               

               
               277-568, gnl|dasNov1|scaffold_7715 (49964-49680)
               

               
               277-568, gnl|echTel1|scaffold_320593 (3448-3228)
               

               
               277-568, gnl|hg17|chr1 (148361272-148361522)
               

               
               277-568, gnl|Hg17|chr1 (148361298-148361583)
               

               
               277-568, gnl|loxAfr1|scaffold_43046 (5706-5469)
               

               
               277-568, gnl|mm7|chr3 (94494791-94494580)
               

               
               277-568, gnl|oryCun1|scaffold_159944 (4729-4482)
               

               
               277-568, gnl|panTro1|chr1 (130113269-130113517)
               

               
               277-568, gnl|rheMac2|chr1 (130012636-130012886)
               

               
               277-568, gnl|rn3|chr2 (189556229-189556037)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               277-568, gnl|bosTau2|chr3 (15242574-15242877)
               

               
               277-568, gnl|canFam2|chr17 (63701043-63701255)
               

               
               277-568, gnl|dasNov1|scaffold_7715 (49964-49680)
               

               
               277-568, gnl|echTel1|scaffold_320593 (3448-3228)
               

               
               277-568, gnl|hg17|chr1 (148361272-148361522)
               

               
               277-568, gnl|Hg17|chr1 (148361298-148361583)
               

               
               277-568, gnl|loxAfr1|scaffold_43046 (5706-5469)
               

               
               277-568, gnl|mm7|chr3 (94494791-94494580)
               

               
               277-568, gnl|oryCun1|scaffold_159944 (4729-4482)
               

               
               277-568, gnl|panTro1|chr1 (130113269-130113517)
               

               
               277-568, gnl|rheMac2|chr1 (130012636-130012886)
               

               
               277-568, gnl|rn3|chr2 (189556229-189556037)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	277-568, gnl\|bosTau2\|chr3 (15242574-15242877)
	277-568, gnl\|canFam2\|chr17 (63701043-63701255)
	277-568, gnl\|dasNov1\|scaffold_7715 (49964-49680)
	277-568, gnl\|echTel1\|scaffold_320593 (3448-3228)
	277-568, gnl\|hg17\|chr1 (148361272-148361522)
	277-568, gnl\|Hg17\|chr1 (148361298-148361583)
	277-568, gnl\|loxAfr1\|scaffold_43046 (5706-5469)
	277-568, gnl\|mm7\|chr3 (94494791-94494580)
	277-568, gnl\|oryCun1\|scaffold_159944 (4729-4482)
	277-568, gnl\|panTro1\|chr1 (130113269-130113517)
	277-568, gnl\|rheMac2\|chr1 (130012636-130012886)
	277-568, gnl\|rn3\|chr2 (189556229-189556037)