Non-Coding RNA Search

reje16b_g6.y1

Sequence:


               
               GTTTTCCCAACTCTTCCATCCAATGTTCAAAAAAATATATATAGCTATAGATTCACATGT
ATGACGTGAATGGCATATGTGCCATATAGTCTCCTTTTAAGATTGTTTTCAAGATCCCTA
AAAGGGCCCTCCAGGCATCAGACTTTGTGTCCTCTCGTTGGAGCAGTGAGCAGAACAAAC
CTCCTAGGAGACCGGCTGCAGGGTCACCTGTGAGTCGGGGGTGAAAGGCAGAGCTGTCCT
AAGAATGCACTGTCCTCCTGAGCCTAGGTTTTCTGCTCTGCGGCAGCCAAGAAACAGATC
TGGACATGGTTTATTATTCTGTGGCTGCTCTTGGAGGCTGAGGGATGTGGGGAGGATGTG
AGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTCCCAACTCTTCCATCCAATGTTCAAAAAAATATATATAGCTATAGATTCACATGT
ATGACGTGAATGGCATATGTGCCATATAGTCTCCTTTTAAGATTGTTTTCAAGATCCCTA
AAAGGGCCCTCCAGGCATCAGACTTTGTGTCCTCTCGTTGGAGCAGTGAGCAGAACAAAC
CTCCTAGGAGACCGGCTGCAGGGTCACCTGTGAGTCGGGGGTGAAAGGCAGAGCTGTCCT
AAGAATGCACTGTCCTCCTGAGCCTAGGTTTTCTGCTCTGCGGCAGCCAAGAAACAGATC
TGGACATGGTTTATTATTCTGTGGCTGCTCTTGGAGGCTGAGGGATGTGGGGAGGATGTG
AGCCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               235-346, - strand, RNAz p=0.780638

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               235-346, - strand, RNAz p=0.780638

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-189, gnl|bosTau2|chr1 (68906933-68907118)
               

               
               1-189, gnl|Hg17|chr3 (162269857-162270047)
               

               
               1-189, gnl|Mm7|chr3 (69654372-69654557)
               


               
               222-364, gnl|bosTau2|chr1 (68907168-68907310)
               

               
               222-364, gnl|canFam2|chr34 (30067374-30067839)
               

               
               222-364, gnl|dasNov1|scaffold_33425 (6756-7241)
               

               
               222-364, gnl|echTel1|scaffold_314501 (45666-45226)
               

               
               222-364, gnl|galGal2|chr9 (21552556-21553019)
               

               
               222-364, gnl|hg17|chr3 (162269910-162270399)
               

               
               222-364, gnl|Hg17|chr3 (162270113-162270263)
               

               
               222-364, gnl|loxAfr1|scaffold_3921 (81344-80852)
               

               
               222-364, gnl|mm7|chr3 (69654424-69654869)
               

               
               222-364, gnl|Mm7|chr3 (69654602-69654741)
               

               
               222-364, gnl|oryCun1|scaffold_208987 (39867-40317)
               

               
               222-364, gnl|panTro1|chr2 (165527611-165528100)
               

               
               222-364, gnl|rheMac2|chr2 (126631724-126631235)
               

               
               222-364, gnl|rn3|chr2 (159605266-159605701)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-189, gnl|bosTau2|chr1 (68906933-68907118)
               

               
               1-189, gnl|Hg17|chr3 (162269857-162270047)
               

               
               1-189, gnl|Mm7|chr3 (69654372-69654557)
               


               
               222-364, gnl|bosTau2|chr1 (68907168-68907310)
               

               
               222-364, gnl|canFam2|chr34 (30067374-30067839)
               

               
               222-364, gnl|dasNov1|scaffold_33425 (6756-7241)
               

               
               222-364, gnl|echTel1|scaffold_314501 (45666-45226)
               

               
               222-364, gnl|galGal2|chr9 (21552556-21553019)
               

               
               222-364, gnl|hg17|chr3 (162269910-162270399)
               

               
               222-364, gnl|Hg17|chr3 (162270113-162270263)
               

               
               222-364, gnl|loxAfr1|scaffold_3921 (81344-80852)
               

               
               222-364, gnl|mm7|chr3 (69654424-69654869)
               

               
               222-364, gnl|Mm7|chr3 (69654602-69654741)
               

               
               222-364, gnl|oryCun1|scaffold_208987 (39867-40317)
               

               
               222-364, gnl|panTro1|chr2 (165527611-165528100)
               

               
               222-364, gnl|rheMac2|chr2 (126631724-126631235)
               

               
               222-364, gnl|rn3|chr2 (159605266-159605701)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	1-189, gnl\|bosTau2\|chr1 (68906933-68907118)
	1-189, gnl\|Hg17\|chr3 (162269857-162270047)
	1-189, gnl\|Mm7\|chr3 (69654372-69654557)

	222-364, gnl\|bosTau2\|chr1 (68907168-68907310)
	222-364, gnl\|canFam2\|chr34 (30067374-30067839)
	222-364, gnl\|dasNov1\|scaffold_33425 (6756-7241)
	222-364, gnl\|echTel1\|scaffold_314501 (45666-45226)
	222-364, gnl\|galGal2\|chr9 (21552556-21553019)
	222-364, gnl\|hg17\|chr3 (162269910-162270399)
	222-364, gnl\|Hg17\|chr3 (162270113-162270263)
	222-364, gnl\|loxAfr1\|scaffold_3921 (81344-80852)
	222-364, gnl\|mm7\|chr3 (69654424-69654869)
	222-364, gnl\|Mm7\|chr3 (69654602-69654741)
	222-364, gnl\|oryCun1\|scaffold_208987 (39867-40317)
	222-364, gnl\|panTro1\|chr2 (165527611-165528100)
	222-364, gnl\|rheMac2\|chr2 (126631724-126631235)
	222-364, gnl\|rn3\|chr2 (159605266-159605701)