Non-Coding RNA Search

reje22b_i18.y1

Sequence:


               
               CTCTATGGAGTGGCCTGGCATGAGAGGACAGTTCCAGAAAGAAAAGACAGCCATAGCCAA
TGCAGCTCCTGAACTGTCGGTCATGCTCTGATGAGGTTAGGAGGTTGGAAAACCCATGGC
CTGGACTCTAGGCTGCAGCCCCTGGATGCTTTTCAGCCTGGAGTTTTTGATGCCTGAGGA
AAGAGATGAACTAGATGCTGAGGAACTGAGACAGGCAGGGTCAGATTGCAGAGGTTCACA
TCCTGGCTCTGCCATTTATGGGCTGGGTGACCTTGCCCAGTTTCCTTAACCTCTCTGAGC
CCCTTTTGAAATTCAGGTGTGATGGTCCTACTTGGCCCCACCTCATAAGGTTGTTTTGAG
GAATAAACGAGCTAAGCCATGAGTTAAAGCAAATAGTATGAGATGAGGGCAAGTGCTTAA
TAGATGTCAGCTGGTTTGCTGGGAGGCCAGACCTGCAAGTCAAAGGAACAAGGGGATTGA
TCTTTAACATGATCTGTGGCACAGATGAAAGGCCCCAGGACATTCTTTGGCCACAGATCC
ATCATTCAAAAATGATGGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTATGGAGTGGCCTGGCATGAGAGGACAGTTCCAGAAAGAAAAGACAGCCATAGCCAA
TGCAGCTCCTGAACTGTCGGTCATGCTCTGATGAGGTTAGGAGGTTGGAAAACCCATGGC
CTGGACTCTAGGCTGCAGCCCCTGGATGCTTTTCAGCCTGGAGTTTTTGATGCCTGAGGA
AAGAGATGAACTAGATGCTGAGGAACTGAGACAGGCAGGGTCAGATTGCAGAGGTTCACA
TCCTGGCTCTGCCATTTATGGGCTGGGTGACCTTGCCCAGTTTCCTTAACCTCTCTGAGC
CCCTTTTGAAATTCAGGTGTGATGGTCCTACTTGGCCCCACCTCATAAGGTTGTTTTGAG
GAATAAACGAGCTAAGCCATGAGTTAAAGCAAATAGTATGAGATGAGGGCAAGTGCTTAA
TAGATGTCAGCTGGTTTGCTGGGAGGCCAGACCTGCAAGTCAAAGGAACAAGGGGATTGA
TCTTTAACATGATCTGTGGCACAGATGAAAGGCCCCAGGACATTCTTTGGCCACAGATCC
ATCATTCAAAAATGATGGTAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               39-158, - strand, RNAz p=0.849922
               

               
               204-320, - strand, RNAz p=0.987491
               

               
               412-526, + strand, RNAz p=0.803016

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-158, - strand, RNAz p=0.849922
               

               
               204-320, - strand, RNAz p=0.987491
               

               
               412-526, + strand, RNAz p=0.803016

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               2-526, gnl|bosTau2|chr25 (9431203-9431736)
               

               
               2-526, gnl|canFam2|chr6 (34811272-34810906)
               

               
               2-526, gnl|hg17|chr16 (10933510-10933898)
               

               
               2-526, gnl|Hg17|chr16 (10934547-10933515)
               

               
               2-526, gnl|loxAfr1|scaffold_15216 (7-393)
               

               
               2-526, gnl|panTro1|chr18 (11265004-11265381)
               

               
               2-526, gnl|rheMac2|chr20 (11001362-11001752)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-526, gnl|bosTau2|chr25 (9431203-9431736)
               

               
               2-526, gnl|canFam2|chr6 (34811272-34810906)
               

               
               2-526, gnl|hg17|chr16 (10933510-10933898)
               

               
               2-526, gnl|Hg17|chr16 (10934547-10933515)
               

               
               2-526, gnl|loxAfr1|scaffold_15216 (7-393)
               

               
               2-526, gnl|panTro1|chr18 (11265004-11265381)
               

               
               2-526, gnl|rheMac2|chr20 (11001362-11001752)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	39-158, - strand, RNAz p=0.849922
	204-320, - strand, RNAz p=0.987491
	412-526, + strand, RNAz p=0.803016

	2-526, gnl\|bosTau2\|chr25 (9431203-9431736)
	2-526, gnl\|canFam2\|chr6 (34811272-34810906)
	2-526, gnl\|hg17\|chr16 (10933510-10933898)
	2-526, gnl\|Hg17\|chr16 (10934547-10933515)
	2-526, gnl\|loxAfr1\|scaffold_15216 (7-393)
	2-526, gnl\|panTro1\|chr18 (11265004-11265381)
	2-526, gnl\|rheMac2\|chr20 (11001362-11001752)